Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08009 ATGGCCTTTACTCATCAACTTTGTTCAAACAACACATTCCCTATTGATCTAACAGCAGAGTTCTCCACTGCAGGGGTGGCTGCAGTAAGTGGCAATACCTCAGTTATGGACAATACAATGTGGGGTCATCAGGATCCTGTGCTTGATAATGGAGCACTTGATCATATTGTACAATTTCAGGATTGGGACACCACCATGTCTAACCAGCCTTGGATGTCAACTTCCTCATCACCAGAGAACTTGGCTATTTCTGAATGTAAAATGGGCTTCTATGATGGCACTGCAGGGTTTCAGAATTTCAATGGTTCTAATACTGCCACACAAAACTGGGTAATTCAAGATCAAATGCCAGCAAGTGAAGAACATAATATAAAGATAGAAAGATACTCAGAAGAAGAAAGAAGGGAAAGAATTCTCCGATATTTGAAGAAAAGAAATCAAAGGAACTTTAACAAAACCATCAAGTATGCATGTCGGAAAACCTTAGCTGATCGGCGAGTCAGAGTGAGGGGAAGGTTTGCAAGAAACAATAATATTGAGCTATCATCTGAGGAAGTCATGGCAAGGAAAAACAATGAGATTAATAGTAGTCACAAAGAAGACTTTTATGGTCATGATTCAATCCAATTCCAGTTCCAGCTAAAGAATGATGATGATGATTGGCTGCAAGAGGCGATGACAAGTTTGGTCTATCTATCTCATTCATCCCCGGATGATGATATATAG 726 0.3981 MAFTHQLCSNNTFPIDLTAEFSTAGVAAVSGNTSVMDNTMWGHQDPVLDNGALDHIVQFQDWDTTMSNQPWMSTSSSPENLAISECKMGFYDGTAGFQNFNGSNTATQNWVIQDQMPASEEHNIKIERYSEEERRERILRYLKKRNQRNFNKTIKYACRKTLADRRVRVRGRFARNNNIELSSEEVMARKNNEINSSHKEDFYGHDSIQFQFQLKNDDDDWLQEAMTSLVYLSHSSPDDDI. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08009 241 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 74 182 IPR045281 GO:0009909
Seca4g08009 241 Pfam CCT motif 134 176 IPR010402 GO:0005515
Seca4g08009 241 ProSiteProfiles CCT domain profile. 134 176 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08009 Seca-Chr4 187548171 187550077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08009 111 180 C2C2-CO-like Transcription Factor Family AT5G15850 37.143 1.75e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g08009 CCT 1.2e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08009 - - gmx:102660475 223.016