Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08008 ATGAAGGAGGGTGGTAGAAAACAAGGTGCAATGGCGCCATGTGCTGCATGCAAGCTTCTTCGAAGGAGATGTGCACAAGATTGTGTCTTTGCTCCTTATTTTCCTGCTGATGAACCCCAGAAGTTTGCCAGTGTTCACAAGGTTTTTGGAGCTAGCAATGTCAACAAAATGCTACAGGAATTACCAGAGCACCAACGAGGTGATGCAGTTAGCTCAATGGTATATGAAGCAAATGCAAGGGTGAGGGACCCTGTTTATGGATGTGTGGGAGCCATATCCTCTCTACAACAACAGGTTGATGTGTTACAAACCCAACTAGCACTTGCACAAGCAGAGGTTGTGCACATGAGATCAATGCGCCAAGTCTCAACTACTTCATCTGATCATCACCATCACCACAAATCACTCCCTTCAGCCTCTAATTCATCCTCAGAGAACTTATCACCATCAAGCACCAGGCTCTTGTCTTCACAAACCACCAAGTCCCTTTTTACCATGGACATGGTTGTTGATCAAGCTAACATGGGAGAGTCTTTGTGGTCATGCTAA 549 0.4554 MKEGGRKQGAMAPCAACKLLRRRCAQDCVFAPYFPADEPQKFASVHKVFGASNVNKMLQELPEHQRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMRSMRQVSTTSSDHHHHHKSLPSASNSSSENLSPSSTRLLSSQTTKSLFTMDMVVDQANMGESLWSC. 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08008 182 MobiDBLite consensus disorder prediction 119 154 - -
Seca4g08008 182 Coils Coil 92 112 - -
Seca4g08008 182 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Seca4g08008 182 MobiDBLite consensus disorder prediction 137 154 - -
Seca4g08008 182 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
Seca4g08008 182 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08008 Seca-Chr4 187497377 187503239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08008 1 182 AS2 family AT1G31320 70.879 6.27e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g08008 LOB 1.7e-43 No_clan