Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g08001 ATGGGTTTTGATGATTTCATGAACAAGGATGATGAAGGTCCACTTCCAGGGTTCCGATTCCACCCCACAGATGAAGAACTTGTAGGTTTCTATCTTCGCCGAAAGCTTGACAAGAAGCCCATTAGTCTCGAACTCATCAAACAGATCGATATATACAAATATGATCCATGGGATCTTCCAAAAGGCAGTACTAGTGGTGGGGAGAAGGAGTGGTACTTCTTTTGCAAAAGAGGGAGAAAGTACAGGAATAGCATAAGGCCCAATAGGGTGACTGGCTCTGGGTTCTGGAAAGCAACTGGGATAGACAAGCCAGTGTACTCACTCGGAGGACATGGCAATGATTGCATTGGTCTCAAGAAAACATTGGTCTACTACTGTGGTAGTGCGGGCAAAGGCACCAAAACTGATTGGATGATGCATGAGTTTCGCCTTCCCTCTAATAATGACACCAATACCAACACCAACACCAACACTAACAATAATATTGCAGACATTGCACAACAAGAAGCTGAAATTTGGACATTGTGTCGAATTTTCAAAAGGAATGTGTCACCAAGAAAGCAGTACAGTACACCTGATTTAAGACAATTTGGTAATAAGCGTCTTTGCACTGAGAAGATCACTAAAATGAGTAGCGTGGAGCATTGTAATGCTAGTAGAGAAGCATATATAAATTTTGGCTCGGGCTTTGGTCATTATCACAATGATCATAAGCCTATGATTAACAACAATGCTAGTAGTGATCAAAGGCGTGAGTTTCTTGTGGATCAATTGTTGAGCTCTCCCGTGGCACAACAACCACCACCTCAAGTAGTAAATGCACCATCTTCAAACTTTTGGATTAGCCCCGCAGATGATGACTTCTTCACATTTGAGAACTGGGATGAGCTTGGATCAGTTGTGAAGTATGCAGTTGATTCACCCATAATGTAA 933 0.4223 MGFDDFMNKDDEGPLPGFRFHPTDEELVGFYLRRKLDKKPISLELIKQIDIYKYDPWDLPKGSTSGGEKEWYFFCKRGRKYRNSIRPNRVTGSGFWKATGIDKPVYSLGGHGNDCIGLKKTLVYYCGSAGKGTKTDWMMHEFRLPSNNDTNTNTNTNTNNNIADIAQQEAEIWTLCRIFKRNVSPRKQYSTPDLRQFGNKRLCTEKITKMSSVEHCNASREAYINFGSGFGHYHNDHKPMINNNASSDQRREFLVDQLLSSPVAQQPPPQVVNAPSSNFWISPADDDFFTFENWDELGSVVKYAVDSPIM. 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g08001 310 SUPERFAMILY NAC domain 12 181 IPR036093 GO:0003677|GO:0006355
Seca4g08001 310 Gene3D NAC domain 23 184 IPR036093 GO:0003677|GO:0006355
Seca4g08001 310 FunFam NAC domain-containing protein 35 23 184 - -
Seca4g08001 310 Pfam No apical meristem (NAM) protein 16 144 IPR003441 GO:0003677|GO:0006355
Seca4g08001 310 ProSiteProfiles NAC domain profile. 14 181 IPR003441 GO:0003677|GO:0006355
Seca4g08001 310 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g08001 Seca-Chr4 187139161 187141655 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g08001 11 192 NAC Transcription Factor Family AT5G39820 58.639 1.26e-73 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g08001 NAM 9.9e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g08001 - - gmx:100790471 401.749