Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07980 ATGAGGACAGAGATGCAAGATCTTGAAGCTTTAGAGGGCTCCTCTAGTGGAAACAATCTAGAAGTTGAAATAACTGATGGAGATGACTTAAAAGGGATTCTATCTTCAGGGCAAGAAGTTGTTGTGAAAAAGCTTTCAAAAACTTCTGGACAAGGAGTTATTGAATTAAAAAATGAATTAACACTCATATCTAAGCTTCATCACACAAATCTTGTTCAGCTACTCGGTCACTGCATTCATGAACAAGAGAGGATGTTGGTCTATGAGTATATGGCAAACAAAAGCTTGGACTTCTTTTTATTTGATTCTACTGGAAGAAAGTTACTAGATTGGAACATGTGCTTTAGCATAATAGAAGGAATTGCTCAAGGATTACTACACCTTCACAAATACTCAAGACTTAGAATTATCCACAAAGATTTGAAGGCTAGTAACATACTATTGGATAAGAATATGAACCCAAAAATTTCTGATTTTGGTGTAGCAAGAATTATCAGAGACTAA 504 0.3492 MRTEMQDLEALEGSSSGNNLEVEITDGDDLKGILSSGQEVVVKKLSKTSGQGVIELKNELTLISKLHHTNLVQLLGHCIHEQERMLVYEYMANKSLDFFLFDSTGRKLLDWNMCFSIIEGIAQGLLHLHKYSRLRIIHKDLKASNILLDKNMNPKISDFGVARIIRD. 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07980 167 MobiDBLite consensus disorder prediction 1 20 - -
Seca4g07980 167 Gene3D Transferase(Phosphotransferase) domain 1 91 167 - -
Seca4g07980 167 Pfam Protein tyrosine and serine/threonine kinase 36 165 IPR001245 GO:0004672|GO:0006468
Seca4g07980 167 SUPERFAMILY Protein kinase-like (PK-like) 31 166 IPR011009 -
Seca4g07980 167 SMART serkin_6 5 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07980 167 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
Seca4g07980 167 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 27 165 - -
Seca4g07980 167 Gene3D Phosphorylase Kinase; domain 1 2 90 - -
Seca4g07980 167 FunFam Putative DUF26-domain receptor-like protein kinase family protein 12 90 - -
Seca4g07980 167 FunFam Os07g0541700 protein 91 167 - -
Seca4g07980 167 ProSiteProfiles Protein kinase domain profile. 8 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07980 Seca-Chr4 185978726 185979660 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07980 1 164 Receptor kinase-like Gene Family AT4G11530 55.488 1.27e-55 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07980 PK_Tyr_Ser-Thr 6.6e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07980 - - lja:Lj3g3v0392830.2 252.292