Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07979 ATGGTTTTCTGTGAACAAGGGAAACATCATGTTTTCCTTGTTTTGACATTGATGTGTGTGTGTTGGACTACTTGCATCCATGTCTCAGCCGCAAATGACAGCTTGAAGCCTGGAGAGACACTGGATACAAATATCACAATATATGCCCAAGGAGTTGATGATTGGGTAGTTTGGACTGCTAATAGAAATCAACCAGTTGACCCAGATTCTGCAGTTTTATTACTGGATCATTCTGGTGTGCTCAAAATTGAATCCAAAGATGCCAAACCCATAATTCTTTATTCTCCACCTCAAACAATTAACAACACTGTGGCCACGTTGTTGGACACAGGCAACTTTGTGCTGCAACAACTTCATCCCAATGGGATGAAGAGTATGTTGTGGCAAAGTTTTGATTATCCCACTGACAGTTTGCTCCCTGGGATGAAGTTAGGTGTCAGTCACAAAACTGCTCATAACTGGTCTTTGGTTTCATGGTTTAGTCGTTCACTCCCATATCCTGGTCCATTCAGGCTTGATTGGGAACCAAAAAGAAGAGAACTTGTCATTAGTAAAAATGAGCAAGTGTACTGGAGAAGTGGGGAACTGAGAAACAACAGATTTGAGCACGTTTCAGCAGAAGATGAAGCCCAGTACAGCACTGTGTCCAATAAGGATGAAGAGTATTTCACATTCACAACTCCAAAAGAAGAGCTTACAAAGTGGACGCTATTAGAAACTGGACAGATGTTAAACAGGAAAGGGAATGATATTGCAAGGGCTGATATGTGTTATGGTTACAACACTGATGGAGGATGCCAGAAGTGGGAGGAGATACCAACCTGCAGGGGTCATGATTATGAATTTGAGTTCAAGGCTGGTTACCCCAATTTACACATGAAAACTGATCTGAAAAATGTGAGTTATGGCATAAGTGATTGCCAGGCTATTTGCTGGAGCAACTGCAGCTGCATTGGATTCGCATCCTTAAATGATAATGGAACTGGTTGTATGTTGTTCCAATCAATGGAAGGTACTAATATTGCAGGTGGTGGCGAATCCTTTTACATGCTAGTAAAGAAAACCAATCACAAAGTATTCTATGCAGGTACAACAAAGTGGAAATGGATAATTGCTGCTATAGCAACTGCTCTACTCATAGTCTGCCTTTCCATCATTTGTCGTGCCTTAATGAAAAGAAAATATGTGCTTCAAGAGAATAAAAGGAAGAGAATGAGGACTAAGATGCAAGATCTTGAAGCTTCAGGGGGCTCCTCTAGTGGCAACAATCTAGAAGTTGAAATAAATGATGGAGATGACTTAAAAGTATTTAGCTATGCAACCATAATGGAGGCTACCAATGGCTTTTCATCTGAAAACAAGTTAGGACAGGGAGGTTTTGGACCTGTTTTTAAGGGGATTCTATCTTCAGGGCAAGAAGTTGCTGTGAAAAAGCTTTCAAAAACTTCTGGACAAGGAGTTATTGAATTTAAAAATGAATTAACACTCATATCTAAGCTCCAGCACACAAATCTCGTTCAGCTACTCGGTCACTGCATTCATGAACAAGAGAGGATGTTGGTCTATGAGTATATGGCAAACAAAAGCTTGGACTTCTTTTTATTTGATTCTAGTGGAAGAAAGTTACTAGATTGGAACAAGCGCTTTAGCATAATAGAAGGAATTGCTCAAGGATTACTATACCTTCACAAATACTCAAGACTCAGAATTATCCACAGAGATTTGAAGGCTAGTAACATACTCCTGGATGAGAATATGAACCCAAAAATTTCTGATTTTGGTGTAGCAAGAATGTTTACAAAACATGAATCCGAAGCAAATACCAACAGGATTGTTGGGACATATGGTTACATGTCTCCAGAGTATGCAATGGAAGGAGTTTTCTCTACAAAATCTGATGTGTATAGCTTTGGAGTGCTGATACTTGAAATTGTTAGTGGTAGAAGAAACAATAGCTTCTGCTCTGAAGAACGACCACTTAATCTAGTAGGACACGCATGGGAGCTATGGAAAGAAGGTGTGGTTCTTCAGTTGGTGGATCCAGCACTGCACAATTCATTTACTGATGATGAAGTGCTAAGATGTGTTCACGTTGGTCTATTATGTGTAGAAGAAAATGCAGACGATCGCCCCACCATGTCCAGTGTTATATCGATGTTAACAAATAAAAGCACAGTAAATACTTTGCCTAAAAAACCTGCATATTATGTTAGAACAAGTGTCTTCGAGGATGAAACGTGCACTAAAGAATTTGGCGTGGATTCCATATATGAATATTCTGGCTCCCATATATATTCAATGTAG 2304 0.3963 MVFCEQGKHHVFLVLTLMCVCWTTCIHVSAANDSLKPGETLDTNITIYAQGVDDWVVWTANRNQPVDPDSAVLLLDHSGVLKIESKDAKPIILYSPPQTINNTVATLLDTGNFVLQQLHPNGMKSMLWQSFDYPTDSLLPGMKLGVSHKTAHNWSLVSWFSRSLPYPGPFRLDWEPKRRELVISKNEQVYWRSGELRNNRFEHVSAEDEAQYSTVSNKDEEYFTFTTPKEELTKWTLLETGQMLNRKGNDIARADMCYGYNTDGGCQKWEEIPTCRGHDYEFEFKAGYPNLHMKTDLKNVSYGISDCQAICWSNCSCIGFASLNDNGTGCMLFQSMEGTNIAGGGESFYMLVKKTNHKVFYAGTTKWKWIIAAIATALLIVCLSIICRALMKRKYVLQENKRKRMRTKMQDLEASGGSSSGNNLEVEINDGDDLKVFSYATIMEATNGFSSENKLGQGGFGPVFKGILSSGQEVAVKKLSKTSGQGVIEFKNELTLISKLQHTNLVQLLGHCIHEQERMLVYEYMANKSLDFFLFDSSGRKLLDWNKRFSIIEGIAQGLLYLHKYSRLRIIHRDLKASNILLDENMNPKISDFGVARMFTKHESEANTNRIVGTYGYMSPEYAMEGVFSTKSDVYSFGVLILEIVSGRRNNSFCSEERPLNLVGHAWELWKEGVVLQLVDPALHNSFTDDEVLRCVHVGLLCVEENADDRPTMSSVISMLTNKSTVNTLPKKPAYYVRTSVFEDETCTKEFGVDSIYEYSGSHIYSM. 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07979 767 Pfam D-mannose binding lectin 56 159 IPR001480 -
Seca4g07979 767 PIRSF SRK 252 763 IPR024171 GO:0004674
Seca4g07979 767 PIRSF SRK 35 254 IPR024171 GO:0004674
Seca4g07979 767 Gene3D Transferase(Phosphotransferase) domain 1 525 735 - -
Seca4g07979 767 CDD STKc_IRAK 455 722 - -
Seca4g07979 767 SMART serkin_6 449 720 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07979 767 Pfam PAN-like domain 302 333 IPR003609 -
Seca4g07979 767 Gene3D Phosphorylase Kinase; domain 1 412 524 - -
Seca4g07979 767 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Seca4g07979 767 SUPERFAMILY Protein kinase-like (PK-like) 433 740 IPR011009 -
Seca4g07979 767 ProSiteProfiles Bulb-type lectin domain profile. 1 128 IPR001480 -
Seca4g07979 767 Gene3D - 31 132 IPR036426 -
Seca4g07979 767 SMART blect_4 32 134 IPR001480 -
Seca4g07979 767 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 525 728 - -
Seca4g07979 767 ProSiteProfiles Protein kinase domain profile. 449 726 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07979 767 Coils Coil 395 415 - -
Seca4g07979 767 SUPERFAMILY alpha-D-mannose-specific plant lectins 56 161 IPR036426 -
Seca4g07979 767 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 417 524 - -
Seca4g07979 767 Pfam Protein tyrosine and serine/threonine kinase 452 720 IPR001245 GO:0004672|GO:0006468
Seca4g07979 767 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 114 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07979 Seca-Chr4 185898836 185902336 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07979 437 735 Receptor kinase-like Gene Family AT4G11530 59.667 9.95e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07979 PK_Tyr_Ser-Thr 2.8e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07979 - - lja:Lj3g3v0392830.2 999.193