Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07978 ATGGCACTGAGCACTTACTTCAACTTGGACTTCCATCAAATTCCAAATTCACAAATGATCAGCACCTTCAATGAAGTAACACCAGTACTTGCACCAGAACATCACTTCCTTTCTTATTCAGAAGAAAGCTTCTTCCTTCCAAACACCACCTTTAGTTCCTATTTTGACCATACAAGTTTTCTATACCCTGAAACCTACCCTCATTTCCTTCCTTGCACCTCTGTTTATGAATATGACCCCATCAATATCTCATTCTCTGATGATAATTACCCACCTGATCAAGATTACAACTTTCTTCCAAATCCAAAGCGCCACAAGTGCTTTGAGCACTCTTCACTAGACCTTGTTCCACCAAGTACCAATTTCTTTGATGGGTTTGTCCCAAATCCTTGTTCCTTCCCAACAGAGGAACTACCACTACCACTACCACTACCAGAAGTAGAACTCTGTTCTGCTATAACAGAGTTCAAAGTTCCAGAGCTTCCACAGGGTGGTTTTGATGCAAATAATAACCAGCATGAGAAGAAAACCAACGAGAAAATTACCATCTCAGCGCAGAGCTTGGCAGCACGTGAAAGAAGGAGGAAGATCACTGAGAAGACACAGGAGCTAGGGAAGTTGGTTCCTGGAGGGTGTAAGATGAACACAGCTGAAATGTTGCATGCAGCTGGAAAGTATGTTCAGTACTTGCAGGCCCAAGTTGAGATGCTTCAACTTATGAAGACACTCCAAGAGGAAGAGTTAGCACCTTCAATTGATGAAGATCTTCATACCCTGCTTGTCTCTCCCTCTATTCAAGAGAAAATGTACTCGGAAGAGAAGTGCTTTGTTCCAAAAGACTTCATTACCACTTTGACAAATCATGACAATCTTGGATCAAGTCCTTCCATCCTTAAAGATCTCAAACGGTTGATTGGGACAGACATTAAGAAAGCAAATCAAGAGTAG 948 0.4177 MALSTYFNLDFHQIPNSQMISTFNEVTPVLAPEHHFLSYSEESFFLPNTTFSSYFDHTSFLYPETYPHFLPCTSVYEYDPINISFSDDNYPPDQDYNFLPNPKRHKCFEHSSLDLVPPSTNFFDGFVPNPCSFPTEELPLPLPLPEVELCSAITEFKVPELPQGGFDANNNQHEKKTNEKITISAQSLAARERRRKITEKTQELGKLVPGGCKMNTAEMLHAAGKYVQYLQAQVEMLQLMKTLQEEELAPSIDEDLHTLLVSPSIQEKMYSEEKCFVPKDFITTLTNHDNLGSSPSILKDLKRLIGTDIKKANQE. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07978 315 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 174 278 IPR045843 GO:0003700|GO:0006355
Seca4g07978 315 Gene3D - 172 251 IPR036638 GO:0046983
Seca4g07978 315 Pfam Helix-loop-helix DNA-binding domain 188 231 IPR011598 GO:0046983
Seca4g07978 315 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 245 IPR036638 GO:0046983
Seca4g07978 315 CDD bHLH_AtbHLH_like 186 238 IPR045239 -
Seca4g07978 315 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 181 230 IPR011598 GO:0046983
Seca4g07978 315 SMART finulus 187 236 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07978 Seca-Chr4 185877608 185879852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07978 55 309 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 35.249 2.16e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g07978 HLH 5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07978 - - lang:109363529 303.908