Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07971 ATGGAATTTAACAAGGACTTTATGGATGGTTGTTCTACATTTTGGACTGATGAAAATTGTGAGAGCAACCGAGATGAGTCACGTAATGGGGATGGAAACCCGGTGGGAGACCAAGGTGGGCTGTCATGGGGCGGGAGGATGATACATGAACTAACACATGATGACATTAGACGTCTGGAGTTCGCTTCTAAGGCTGAGGCATATAGTTTTTATTCGGATTATGCCAAACAACGAGGGTTTGCTGTGAGGAAAGATGATATTGAGCGAAATGAGAATGGTGATATTGTTAAGCGGTATTTAGTGTGTAATAAGGAGGGAACAAGGGACAAGAAAAACTTGGAGAGAAAGGACAGAGTGAGGGAGGCGAGGCCAATTACTCGTGTGCAGTGCATAGCAAGGATGCGTGTTTACTTAGATATGAGGAGTGGGAAATGGAAGGTGTCTTCATTCCACGACGATCATAACCATGAGTTAACTCCTCCAACGTATGTTCACATGATGCCAGCTTATAGACGATTGAGTGAATCTGATAAAGCTCAAATTGATACCCTGCATGCAGCCGGTGTGAGAACTTGCCATATTATGAGTTTTATGATTGGACAGAAAGGGGGACATGGTGAATTAGGTTTCTGTAAAAAGGACATGTATAACCACATTGATAAACAGAAGAGGGCTAATATAGAGGATGGTGATGCATTTGCAGCGCTGTGTTATTTGCAGGGAAAGTATAACGGTGATCCACTAATGCATTGCATGTTCAGGACAACAGACGATGGCAGATTGCAGGACCTATTTTGGTGTGACGGTGCAAGTCGTGTTGATTATCAGTGTTTTGGAGATGTAATAGCATTTGACATGACTTATAAGAAGAACAAATATAACAAGCCTTTGGTTATTTTTTACTGGTACAACCACCATGGGGAGACATGTATATTTGGTTGTGCACTTGTTGTTGATGAGAAAACTGAGACTTACAAGTGGGTTCTCGAGACGTTTTTGGAAGCAATGTTTGGCAAAGAGCCCAGTGCCGTAGTTACAGATGGAGATGCAGCCATGCGAGAAGCGATCAGGGTTGTATTCCCAAGTGTAGTTCACAGACTTTGTTCATGGCACATACACCAAAATGCCTGTGAGAATGTGAAGAATTCAAAATTTCTAGAGGAATTCAAGCGCATGATTTATGGAAAATTCACGGAGGATAGATTTGAAAGGGAGTGGACAAACATGGTTGATAAATTTGGATTATCTAACAATAGGTGGGTCCAGAAAATGTATGACATGAAGAGGTTATGGGCAAATTCATATATGGGAGACACATTTTATGGTGGTGTTAGAACAACGTCTGTGTGTGAGGGGATTAATTCGTTCATTAAGAGGTATGTCCAAAATAGGAACAGCCTAGTGGACTTTCTTCACAACTTTGACAGGGCGTTAAAGGAGTACAGACACAATGAATTGATTTCTGATTTTAAGTCATTTTACGGAGAACCTGTATTGACCACAACTCTTTTTACCATTGAGGAATGTGCCTCCAAAGTGTTCACTAGGAAAAAGTTTTGGGAAGTTAAGTCTGAGATTGAGAGTGCAGCCGCGTACAATGTAGTGGATAGGGTTGTGACTGGTGAGACTGTGAGGTTGACAATGAATAAATTTTGCAAACCGGATTATGAGTATGATGTTGTATTAGATAAAAGTGAATTGAAGTTCAATTGTGAGTGTAGAATGTTTGAGTCATGTGGCATTCCCTGCCGTCACATTTTTTGTGCAATGAAGAATGAGCACGTGAAAACCATTCCAAGTAGCCTAATACTGAAGCGATGGACAAAATCAGCGAAGCCTGATTTCATGTCCAGTGAGCCCGTTGTGAGGTTAGATAAGGAGAAGGTTGACATGCTAAGGGAGGGAGGTATAGGTGCTGCATGTGACTATTTATCCCGTGTTGCTAAGAAACATGTGCATGATTACAAGTCCATTATGGATGGCATATATAAACTATCTGGAAAAATTTAG 2010 0.4119 MEFNKDFMDGCSTFWTDENCESNRDESRNGDGNPVGDQGGLSWGGRMIHELTHDDIRRLEFASKAEAYSFYSDYAKQRGFAVRKDDIERNENGDIVKRYLVCNKEGTRDKKNLERKDRVREARPITRVQCIARMRVYLDMRSGKWKVSSFHDDHNHELTPPTYVHMMPAYRRLSESDKAQIDTLHAAGVRTCHIMSFMIGQKGGHGELGFCKKDMYNHIDKQKRANIEDGDAFAALCYLQGKYNGDPLMHCMFRTTDDGRLQDLFWCDGASRVDYQCFGDVIAFDMTYKKNKYNKPLVIFYWYNHHGETCIFGCALVVDEKTETYKWVLETFLEAMFGKEPSAVVTDGDAAMREAIRVVFPSVVHRLCSWHIHQNACENVKNSKFLEEFKRMIYGKFTEDRFEREWTNMVDKFGLSNNRWVQKMYDMKRLWANSYMGDTFYGGVRTTSVCEGINSFIKRYVQNRNSLVDFLHNFDRALKEYRHNELISDFKSFYGEPVLTTTLFTIEECASKVFTRKKFWEVKSEIESAAAYNVVDRVVTGETVRLTMNKFCKPDYEYDVVLDKSELKFNCECRMFESCGIPCRHIFCAMKNEHVKTIPSSLILKRWTKSAKPDFMSSEPVVRLDKEKVDMLREGGIGAACDYLSRVAKKHVHDYKSIMDGIYKLSGKI. 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07971 669 ProSiteProfiles Zinc finger SWIM-type profile. 556 594 IPR007527 GO:0008270
Seca4g07971 669 MobiDBLite consensus disorder prediction 21 41 - -
Seca4g07971 669 Pfam MULE transposase domain 281 375 IPR018289 -
Seca4g07971 669 Pfam FAR1 DNA-binding domain 69 159 IPR004330 -
Seca4g07971 669 Pfam SWIM zinc finger 558 586 IPR007527 GO:0008270
Seca4g07971 669 SMART 26again6 569 596 IPR006564 GO:0008270
Seca4g07971 669 PANTHER OS01G0519700 PROTEIN 59 617 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07971 Seca-Chr4 185783413 185786201 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g07971 MULE 4.3e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07971 - - tpra:123910662 731.865