Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07970 ATGATGGAACAATCAAGATTCAACAAACAGCTTCAATGCGATAACATGGACCCTAGAAGTGAGGAATTCCAGCCTGGATCTCAGTCTGTAATGCAGAACTATCTGGATGGCATGCATACTAATAGAAGACCATCTGACCATTACACATCAGATGTTAAACCAGTACTTAATTATTCAATACAGACCGGTGAGGAATTTGCTCTTGAATTTATGAGAGATAGGGTGAATCTCAGGAAGCCTGCATTTTCAAATGTCAGTGATTCCAATTATACAACTAGTTATATGGAACTGAAAGGCGTTTTAGGCATCAGTCATGCAGGATCTGAAAGTGGGTCCGGCATTTCTATGCTCTCAACGGTTGATAAAGCCCCAACAGAGTTTAACAGACAGAGTACATCATTACATGGGGATAGAAGCAATTATGGGTCAATTCGATCAATACCGAGAACTTCATTGAATCAAGAGACTAGTCAATTTGTGCGTGGGTATGGCTCTTCTGTTGGTTCTGATAGCACATCAATGACAATGAAGTGTCTTTGTAGCTTTGGTGGTAGAATATTACCACGACCGAGTGATGGAAAACTGAGGTATGTTGGAGGTCAGACACGTATTCTTCGTCTAAGAAAGGACATATCTTGGCAGGAGCTCAGGCAGAAAGCATTGTTAATCTATAATCTGGTTCATGTACTAAAGTATCAACTTCCTGGGGAAGATCTTGATGCTTTGGTATCTGTATCATCTGATGAGGATTTGCAGAATATGATGGAGGAATATAATCTTCTAGAAGATAGAGCACACTCACAAAAGCTTAGGATGTTTTTGTTCTCAATGAGTGATTTGGAAGATGCTCAGTTTGCTCTCAGTAGCATTGGTGATGATTCTGAGGTTCAGTATGTTGTTGCTGTTAATGGCATGGACTTGGGATCAAGAAACAACTCAACCCCACTTGGTGTCAGCTTTTCAGCAGATGATTTACATGGATTGGACAGGCAAACTATGGATAGGGAGACTAGTAGAGTTGCTGTAGAATCTATAGGTGTCAACAATGCTCCATTGACTAATGGATTTGATTCTTCATCAGCTGTTCAGTCTTCAAAACCAATATTACCAACTTCTTCAAATGCTTATGAACCTGATCAACTGTCCTATGGTGACCAAATGATACAAGTTGGGGAAACTAGTCATCAATATCTTGTTCACCATGGCCTTAATCCTGCTCCTAACCCTGTGGTTGGAGAGACTCCTATTTCTATGGCTCCTCATCTGCTGAATAATCAACAAAGGATTCTGAATCAAGACCATCCACCTAGTGGATTACGGATGCAAAATTCAGAATTGCCTACAATGCAGGAGAAAAAGATAGTTGATGGTTCAGTTAAACAAGAGAATGATCCTGGTAAAGTTTTATCCTCGGAAACCCCATCCCCAGCTCCCTCACAGCCCTTTGATGGTTACCTGAAAAATAATTATCATGAAGCATCAGTTGTAGTTACCATGCCGGAGGGGCATCTACCTTCACTGCCTTCAACAAAAAAGGTTCAGCACCAGGATTATGAAGATGCCTCTTCTACAACTAGCAGTTTATTTGTTCCTGCTTATATGGATTCCCAGTCCAATGACATTGATTTGAGTTGTCTTCATCCTCCTCCACTTCCTAAAAGAGTTTACTACTCAGAAAGAACTCCCAGGGAGCAAGTAGAGGTCCTGAATCGGTCCTCAAAGTCAGATGACACTCACAGATCTCAGTTTCATGTGTCGGATTTACTTTCTGATGTCAAGCCAGAGGATCCAGTAACAGAAACTGGTGACAACTTGCATGATGGTAATCTATTAAATCCAACTGAAAATTTGAGTATTGCAGCAAAGCCCTTGTCTGCAGATGACCATACAAATGACAATGGGTTTGCCAAACATCAAATGAATAATCTGTTGCCTGATGCAAATGGTCAGATTAAGTCACACCTATCTGAGCACACGGGTCCGGAGTTGAAGCAGCTGTTACTGAGCGATGACGCAAGTAAAGATGTGGAAACTGAACATTCTTGCAAAGATAATCATATCAGGCCCTTGCTTGATGAAACCAAAACCAAAGATGATAATTCAGATCTTCCTGCTATGCATCACGTTTCCTCTGTTAAGCACCTTGATGATCCAGCATCCAATCTTCCAGAGATTGATTGGGGTGAGGCCTCTGGGAAGGAATATAATGACAATCATATGATGCAAGAACTACCTGTTTCTTTAGCTGGGAATATAACCAAAGATGTTTCTCAGGACTTTCCTCCAAATGTTGTTTCCAAACAAGCAGAAGGTGACATTCTCATTGATATTGATGATCGATTTCCCCGTGAACTGCTTTCTGATATGTTTTCTAAAGCAATTCTTGCAGAAGATCCCTCCAGTCAATATGCACTATCCCCAAATGGAATAGGCTTAAGCATAAATATGGAAAATCATGAACCTAAACGGTGGTCTTATTTTCAAAAGTTGGCACAAGAAGGGCTTGATAATGTCTCTCTTATTGATCAGGATCATCTTGGCTTTCCACCTATGATAGGAAAAACTGGAGATAATAGAGATCATCATGCTATGCCTCTAACAACTGATGGAGTTCCTCTAGATCATGAGGATTCCCACCTCAATTTTGGTGAAGAAAATCAGGAGGACTTACATAGAAGGATTGGAATAGAAACCACTGTTCTGAAGTCCAATTATGATCAATCCCAACTTACGGACACTGAAAGTATGCAGTTTGATGCTATGATGGAAAACCTAAGAGCACATGAGTCAGAGTATGAGGATGGCAAGTTTGAAAAAAAAAATTGCAATCTACCTCCACTTGATCCTTCTTTAGGAGATTTTGATATCAGTACTGTGCAGGTCATTAAGAATGAAGATCTTGAAGAGTTGAGGGAACTAGGTTCTGGTACCTTTGGGACTGTGTATCATGGAAAATGGAGAGGAACAGATGTTGCTATTAAAAGAATAAAGAAGAGCTGCTTCACTGGTCGATCATCTGAGCAAGAGAGATTGACTGTAGAGTTCTGGCGGGAAGCTGACATTCTTTCCAAGCTTCATCATCCAAATGTGGTTGCATTTTATGGCGTGGTACAGGATGGACCAGGAGGAACGATGGCCACAGTTACAGAATTTATGGTGGATGGTTCTCTTAGGCATGTATTACTTCGCAAGGATAGGTATCTTGATCGTCGCAAGAGGCTGATAATTGCAATGGATGCAGCTTTTGGAATGGAATATTTGCACTCAAAAAACATTGTGCATTTTGACTTAAAATGTGACAATTTGCTTGTGAACTTGAAAGATCCTTTACGGCCAATATGCAAGGTTGGTGATTTTGGCTTGTCAAAAATTAAAAGAAATACCTTGGTTACTGGTGGTGTGCGGGGGACTCTACCTTGGATGGCACCAGAGCTGTTGAATGGAAGCAGCAACAAGGTCTCGGAAAAGGTAATAGTTTATGTCATTTCTAATGAAATGCTTTTCTCCAACCTCATGACAGTTGATGTGTTCTCCTTTGGCATAGTATTATGGGAAATTCTAACCGGTGAGGAGCCATATGCCAATATGCACTATGGTGCAATTATAGGTGGGATTGTAAATAACACATTAAGGCCAACCATTCCAAGTCATTGTGATCCTGAATGGAAAACATTGATGGAGCAATGTTGGGCACCCAATCCTGGAGCCAGGCCTGCCTTCACAGAAATTGCAAGTCGGTTGCGCATAATGTCTGCAGCAGCTAGCCAAACAAAAACACAGGGCCAAAAGGCATCTAAATGA 3801 0.4094 MMEQSRFNKQLQCDNMDPRSEEFQPGSQSVMQNYLDGMHTNRRPSDHYTSDVKPVLNYSIQTGEEFALEFMRDRVNLRKPAFSNVSDSNYTTSYMELKGVLGISHAGSESGSGISMLSTVDKAPTEFNRQSTSLHGDRSNYGSIRSIPRTSLNQETSQFVRGYGSSVGSDSTSMTMKCLCSFGGRILPRPSDGKLRYVGGQTRILRLRKDISWQELRQKALLIYNLVHVLKYQLPGEDLDALVSVSSDEDLQNMMEEYNLLEDRAHSQKLRMFLFSMSDLEDAQFALSSIGDDSEVQYVVAVNGMDLGSRNNSTPLGVSFSADDLHGLDRQTMDRETSRVAVESIGVNNAPLTNGFDSSSAVQSSKPILPTSSNAYEPDQLSYGDQMIQVGETSHQYLVHHGLNPAPNPVVGETPISMAPHLLNNQQRILNQDHPPSGLRMQNSELPTMQEKKIVDGSVKQENDPGKVLSSETPSPAPSQPFDGYLKNNYHEASVVVTMPEGHLPSLPSTKKVQHQDYEDASSTTSSLFVPAYMDSQSNDIDLSCLHPPPLPKRVYYSERTPREQVEVLNRSSKSDDTHRSQFHVSDLLSDVKPEDPVTETGDNLHDGNLLNPTENLSIAAKPLSADDHTNDNGFAKHQMNNLLPDANGQIKSHLSEHTGPELKQLLLSDDASKDVETEHSCKDNHIRPLLDETKTKDDNSDLPAMHHVSSVKHLDDPASNLPEIDWGEASGKEYNDNHMMQELPVSLAGNITKDVSQDFPPNVVSKQAEGDILIDIDDRFPRELLSDMFSKAILAEDPSSQYALSPNGIGLSINMENHEPKRWSYFQKLAQEGLDNVSLIDQDHLGFPPMIGKTGDNRDHHAMPLTTDGVPLDHEDSHLNFGEENQEDLHRRIGIETTVLKSNYDQSQLTDTESMQFDAMMENLRAHESEYEDGKFEKKNCNLPPLDPSLGDFDISTVQVIKNEDLEELRELGSGTFGTVYHGKWRGTDVAIKRIKKSCFTGRSSEQERLTVEFWREADILSKLHHPNVVAFYGVVQDGPGGTMATVTEFMVDGSLRHVLLRKDRYLDRRKRLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLKDPLRPICKVGDFGLSKIKRNTLVTGGVRGTLPWMAPELLNGSSNKVSEKVIVYVISNEMLFSNLMTVDVFSFGIVLWEILTGEEPYANMHYGAIIGGIVNNTLRPTIPSHCDPEWKTLMEQCWAPNPGARPAFTEIASRLRIMSAAASQTKTQGQKASK. 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07970 1266 CDD STKc_MAP3K-like 973 1247 - -
Seca4g07970 1266 Pfam Protein tyrosine and serine/threonine kinase 968 1247 IPR001245 GO:0004672|GO:0006468
Seca4g07970 1266 SUPERFAMILY CAD & PB1 domains 191 279 - -
Seca4g07970 1266 MobiDBLite consensus disorder prediction 569 602 - -
Seca4g07970 1266 MobiDBLite consensus disorder prediction 569 613 - -
Seca4g07970 1266 MobiDBLite consensus disorder prediction 457 486 - -
Seca4g07970 1266 Gene3D Phosphorylase Kinase; domain 1 960 1054 - -
Seca4g07970 1266 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g07970 1266 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 960 1054 - -
Seca4g07970 1266 SUPERFAMILY Protein kinase-like (PK-like) 957 1247 IPR011009 -
Seca4g07970 1266 MobiDBLite consensus disorder prediction 464 478 - -
Seca4g07970 1266 SMART serkin_6 967 1250 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07970 1266 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1092 1104 IPR008271 GO:0004672|GO:0006468
Seca4g07970 1266 CDD PB1_UP2 179 275 - -
Seca4g07970 1266 Pfam PB1 domain 192 275 IPR000270 GO:0005515
Seca4g07970 1266 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 195 277 - -
Seca4g07970 1266 SMART PB1_new 190 277 IPR000270 GO:0005515
Seca4g07970 1266 Coils Coil 251 271 - -
Seca4g07970 1266 ProSitePatterns Protein kinases ATP-binding region signature. 973 998 IPR017441 GO:0005524
Seca4g07970 1266 ProSiteProfiles Protein kinase domain profile. 967 1249 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07970 1266 MobiDBLite consensus disorder prediction 677 702 - -
Seca4g07970 1266 Gene3D Transferase(Phosphotransferase) domain 1 1055 1266 - -
Seca4g07970 1266 PANTHER SERINE-THREONINE PROTEIN KINASE 220 1248 - -
Seca4g07970 1266 Gene3D - 194 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07970 Seca-Chr4 185760481 185770837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07970 39 643 MAP Kinase Kinase Kinase AT1G16270 39.940 1.66e-92 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Seca4g07970 PK_Tyr_Ser-Thr 7.1e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07970 - - gmx:100817937 1989.93