Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07969 ATGGAAGACTTAAACAAGTGGCTATCCTTCTATATGAATGAAAGTATCAACCATGACTTTGCCATCAGAAGGTTTTGCCCTGCAAGAATGGAGCAAGAGCAAGGAGGAGAGTGCCAAGACCATGAGGCAGTACTTGATGAGATTGAATTATGTTTTTCTGATGCTACCAGCACTCCTTGTTTGGCTTCCACAGAGGTTGATGATTTTGTTGATAGCTTCATCAACATGGATCAGTGTGAGTATGACAAAGAAGATCAAGAATCCCAAGAGAAGCACCAAAGTTTTGATCACTTTGTGGTGAATGAAGAAGATGACCCTGATGCTGATGCATACTCCATGGTGAATGATGTCATTGGATATGTTCCTACCACCATGGAGGATGAAGAATTGGAGATCTATGAAAATGTTGCAATTCCCATGGAGGAGGAAGAAGTTGAAATGAGTGGCTCTTTTGGTGCTATACCTGAGCTTGTTCCATGTGCAGAAGAGGCCAGCCTTGGCATGGACCAAGGATTAGACTTGGTTCACATGTTATTGGCATGTGCTGAGGCTGTAGGCTGCAGAGACACCCAGCAAGCAGAGTTGCTTCTTAACAGAATCTGGGCTTTGGCAAGTCCTTCAGGAGATTCATTGCAGAGAGTCTCCTACTGTTTTGCCACAGGATTGAAGTGTAGGTTGTCACTTCTTCCTCATAATGTCATCACAAATGGTACATTAACAAGTACTTCTATTGATGTCCCTTTGATAACTAGGGAGAATAAGTTGGAAGCTTTTCAACTCCTTTACCAAACCACACCTTACATTGCTTTTGGTTTCATGGCTGCAAATGAAGTTATTTGTCAAGCATCAAAAGGAAAGAGCTCCATACACATAATTGATCTAGGAATGGAGCATACCCTTCAATGGCCTTCCCTTATAAGGGCCCTTGCTTCAAGGCCTGAAGGGCCACCAAAGCTCCGGATCACAGGACTAAACAGCAATGAAAACAACCCAAAACTTCAAACAACCATGGATAAGCTTGTGGAGGAAGCAAGCTCATTGGGTATACCACTTGAGTTCCACATAATATCAGAGCCTGCAACCCCATCTCTTCTTACTATGGAGAAGCTTAACTTGAGAGAAGGTGAAGCTTTGTTTGTTAACAGTATCTTACAGTTGCACAAATATGTCAAAGAAAGTAGAGGCTATCTGAAGGAAATTCTCCAATCAATAAAGAAGCTAAGTCCAACAGCTCTTACAGTGGTAGAGCAAGACACAAACCATAATGGTCCATTCTTCCTTGGGAGATTTTTGGAATCACTGCATTATTACTCAGCTATATTTGATTCTCTTGAGGCAAGTATGCCAAGAAATAGCCAACAGAGAATGAAAATAGAGAGATTACACTTTGCAGAGGAAATTCTTAATATTGTAGCTTGTGAAGGTCCAGATAGAATGGAAAGACATGAAAGGGTAGATCAATGGAGAAGACAATTAGGCAGAGCAGGATTTCAGGTAATGCCACTGAAGTGCACAAGCCAAGCTAGAATGATGCTTTCTGTTTATGACTGTGATGGATATACATTTTCCAGTGAGAAGGGTAGCCTTCTACTTGGGTGGAAAGGAAGGCCAGTAATGATGGCTTCTGCATGGCAAGTGGCAAGTGTATGA 1650 0.4194 MEDLNKWLSFYMNESINHDFAIRRFCPARMEQEQGGECQDHEAVLDEIELCFSDATSTPCLASTEVDDFVDSFINMDQCEYDKEDQESQEKHQSFDHFVVNEEDDPDADAYSMVNDVIGYVPTTMEDEELEIYENVAIPMEEEEVEMSGSFGAIPELVPCAEEASLGMDQGLDLVHMLLACAEAVGCRDTQQAELLLNRIWALASPSGDSLQRVSYCFATGLKCRLSLLPHNVITNGTLTSTSIDVPLITRENKLEAFQLLYQTTPYIAFGFMAANEVICQASKGKSSIHIIDLGMEHTLQWPSLIRALASRPEGPPKLRITGLNSNENNPKLQTTMDKLVEEASSLGIPLEFHIISEPATPSLLTMEKLNLREGEALFVNSILQLHKYVKESRGYLKEILQSIKKLSPTALTVVEQDTNHNGPFFLGRFLESLHYYSAIFDSLEASMPRNSQQRMKIERLHFAEEILNIVACEGPDRMERHERVDQWRRQLGRAGFQVMPLKCTSQARMMLSVYDCDGYTFSSEKGSLLLGWKGRPVMMASAWQVASV. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07969 549 Pfam GRAS domain family 174 545 IPR005202 -
Seca4g07969 549 ProSiteProfiles GRAS family profile. 165 545 IPR005202 -
Seca4g07969 549 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 128 544 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07969 Seca-Chr4 185757261 185758910 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07969 169 549 GRAS Transcription Factor Family AT1G66350 39.896 1.05e-83 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca4g07969 GRAS 3.1e-115 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07969 - - gmx:100814931 900.197