Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07960 ATGATTTTTTTCAAACCCAATAAAAGGGGAACAGTGCAAGGACAATTACTAGTCCAAGATAGGTACATTAATGAAGGGAGATTTCTATATGGTAATAATGCTTATGTTGGTCTAGCTCTGCGTAGAGATTTGGGATCATGGCAAAGACAATGCAAGGGTTACCAATTTTGGACTCAAGCTGACAAGATAGGACACTTCACAATTGAAAATGTTGTACCTGGAGACTACAATTTGTATGCATGGGTTCCTGGCGTTTTTGGGGATTACAAATACAACACTACTATAACAATCACACCAGGATATATGATCCAATTGGGTTCCCTAATATTCAGTCCTCCAAGAAATGGACCTGCCATATGGGAAATTGGCATCCCAGATCGCTCTGCTGCAGAGTTTTATGTTCCAGATCATTATCCTAACCTTGTCAACCGATTATACATTGGGAAACCACAACACAAGTTTAGGCAATATGGGTTGTGGCAGCGTTACACTGAGTTATATCCAAATAAGGACCTCGTTTATAATGTAGGTGTTAGTGATTATCGTAAAGATTGGTTTTATGCTCAGGTTACCAGGAACATAGGAAACAACACATTTTGA 600 0.39 MIFFKPNKRGTVQGQLLVQDRYINEGRFLYGNNAYVGLALRRDLGSWQRQCKGYQFWTQADKIGHFTIENVVPGDYNLYAWVPGVFGDYKYNTTITITPGYMIQLGSLIFSPPRNGPAIWEIGIPDRSAAEFYVPDHYPNLVNRLYIGKPQHKFRQYGLWQRYTELYPNKDLVYNVGVSDYRKDWFYAQVTRNIGNNTF. 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07960 199 SUPERFAMILY Galactose-binding domain-like 115 197 IPR008979 -
Seca4g07960 199 SUPERFAMILY Starch-binding domain-like 6 105 IPR013784 GO:0030246
Seca4g07960 199 CDD RGL4_M 8 108 IPR029413 -
Seca4g07960 199 Pfam Polysaccharide lyase family 4, domain III 119 193 IPR029411 -
Seca4g07960 199 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 3 198 - -
Seca4g07960 199 Pfam Polysaccharide lyase family 4, domain II 32 101 IPR029413 -
Seca4g07960 199 Gene3D - 5 104 - -
Seca4g07960 199 FunFam Rhamnogalacturonate lyase B 5 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07960 Seca-Chr4 185575576 185578507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07960 7 199 Polysaccharide Lyase AT4G37950 61.026 4.52e-80 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07960 K18195 - gmx:100792575 354.755