Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07959 ATGCACTTCTTTACGGGATTGATAGGCCAAGACAATGCCATAGCAAGACATGGCATCCATGGATTACACTGGCCTTACAACATTGAAGTACCTAGCCATCTATTGTTAGAAGGAAACAACAAAATCTATCTGAGGCAGGCCAAAGGTGTAACTCCTTTCCAAGGAATTATGTATGACTACATCCGTTTGGAAAGACCTGAGACCTCAAGGATTTAA 216 0.4167 MHFFTGLIGQDNAIARHGIHGLHWPYNIEVPSHLLLEGNNKIYLRQAKGVTPFQGIMYDYIRLERPETSRI. 72
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07959 71 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 2 67 - -
Seca4g07959 71 Pfam Polysaccharide lyase family 4, domain III 8 63 IPR029411 -
Seca4g07959 71 SUPERFAMILY Galactose-binding domain-like 3 64 IPR008979 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07959 Seca-Chr4 185574869 185575084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07959 3 66 Polysaccharide Lyase AT1G09890 62.500 3.05e-25 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07959 K18195 - gmx:100792575 117.857