Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07951 ATGTCGACCCAATTTGCAAGAAGGGTCTTTTACCAAGAAGGGTCTACAGGTACTTTAGTAATGAATTTGACTGCGCAAGGTGAGGAGATGCAACGCTTCATTATAGATGATGGTTATGTTTTTGATTCATTCGACTTGCATCATGGCTTCAACAACAGTGGTGGTGTTTTAGGAAGAATACACCAGTCAATTATGGACGACGGTTATGTCTTTGATTCTCTAGACTTTGGTCACATCAACAACAACACAGAGAACACTAATGATAGAGTTTTTGGGGTGAAGTCAGCAACTCCAGTTTCTATCGAAAATCTTGAAAGGATCACAATAGATGGAACAACAGAGTCTTCTTCTTTAGGTACAGATTCAAATTCTGCAATACCGGAGTGTTCCATATGTCTTGGGGTTCTCTCAATTGGATCGACAGCAATTCGCATGCCTAACCCATGTTGCCATGTCTTTCATGAAGGCTGCATCATTAGGTGGCTCAATGCATCTAACACATGCCCTTTGTGTCGCAGGAGTATCTAG 528 0.4148 MSTQFARRVFYQEGSTGTLVMNLTAQGEEMQRFIIDDGYVFDSFDLHHGFNNSGGVLGRIHQSIMDDGYVFDSLDFGHINNNTENTNDRVFGVKSATPVSIENLERITIDGTTESSSLGTDSNSAIPECSICLGVLSIGSTAIRMPNPCCHVFHEGCIIRWLNASNTCPLCRRSI. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07951 175 ProSiteProfiles Zinc finger RING-type profile. 129 172 IPR001841 -
Seca4g07951 175 SMART ring_2 129 171 IPR001841 -
Seca4g07951 175 Pfam Ring finger domain 128 172 IPR001841 -
Seca4g07951 175 SUPERFAMILY RING/U-box 128 175 - -
Seca4g07951 175 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 175 IPR013083 -
Seca4g07951 175 PANTHER SI:CH211-59O9.10 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07951 Seca-Chr4 185210847 185211374 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07951 92 172 C3H Transcription Factor Family AT1G14200 35.802 1.77e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07951 - - lang:109353994 122.864