Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07950 ATGGACGATGGTTATATCTTTGATTCTCTAGACTTTGGTCACATCAACAACAACACAGAGAACACTAATGGCAGAGTTTTTGGGGTGAAGCCAGCAACTCCAGTTTCTATCGAAAATCTTGAAAGGGTCACAATAGATGGTACAGATTCAAATTCTTCTATGCCGGAGTGTTCTATATGTCTTGGGGTACTCTCAATTGGGTCGACAGCAATTCGCATGCCCAACCCATGTTGTCATGTCTTTCATGAAGGCTGCATCATTAGGTGGCTCAATACATCTAACACATGCCCTTTGTGTCGTAGGAGTATTTAG 312 0.4231 MDDGYIFDSLDFGHINNNTENTNGRVFGVKPATPVSIENLERVTIDGTDSNSSMPECSICLGVLSIGSTAIRMPNPCCHVFHEGCIIRWLNTSNTCPLCRRSI. 104
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07950 103 SMART ring_2 57 99 IPR001841 -
Seca4g07950 103 PANTHER SI:CH211-59O9.10 31 103 - -
Seca4g07950 103 SMART ringv_2 56 100 IPR011016 GO:0008270
Seca4g07950 103 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 103 IPR013083 -
Seca4g07950 103 SUPERFAMILY RING/U-box 39 103 - -
Seca4g07950 103 ProSiteProfiles Zinc finger RING-type profile. 57 100 IPR001841 -
Seca4g07950 103 Pfam Ring finger domain 56 100 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07950 Seca-Chr4 185203226 185203558 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07950 22 100 C3H Transcription Factor Family AT1G14200 40.506 7.65e-14 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07950 - - lang:109353994 112.464