Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07949 ATGGCGGAGTGTTCCATATGTCTTGGGGTACTCTCAATTGGGTCGCCAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCACGAAGGTTGCATCAATAGGTGGCTCAGTACATCTAACACACATGCCCTTTGTGCCGTAGGTGTATTTAGTTAG 159 0.4717 MAECSICLGVLSIGSPAIRMPNPCCHVFHEGCINRWLSTSNTHALCAVGVFS. 53
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07949 52 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 51 IPR013083 -
Seca4g07949 52 ProSiteProfiles Zinc finger RING-type profile. 4 46 IPR001841 -
Seca4g07949 52 Pfam Ring finger domain 3 46 IPR001841 -
Seca4g07949 52 SUPERFAMILY RING/U-box 3 43 - -
Seca4g07949 52 SMART ringv_2 3 47 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07949 Seca-Chr4 185119467 185119625 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07949 3 46 C3H Transcription Factor Family AT2G42350 43.182 1.53e-08 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07949 K17821 - cam:101490108 63.1586