Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Seca4g07947 | ATGCCTTATAACCCGGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGAGTCGTGTCATCCTGCTTGTGTAGGCATGACCATTGAAGAAGCCAAGAAATTGGACCATTTTGTATGTTCTGAATGTTCGTCTGATGATGACATGAAGAAACCCCAGTCTACATTTCCTGTATCACCAGGATCAGATTGCAAGGTCAGACCACTTCCTGCATCTGTCCTAAATAATACGAGATGCACTTTTGCTTTTGTTCCTTTCATGGTTTTAAATTGTAGTCCACAATATCAAGGAATTTTTTGA | 297 | 0.4209 | MPYNPDDLMVQCEGCKESCHPACVGMTIEEAKKLDHFVCSECSSDDDMKKPQSTFPVSPGSDCKVRPLPASVLNNTRCTFAFVPFMVLNCSPQYQGIF. | 99 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Seca4g07947 | 98 | Pfam | PHD-finger | 5 | 44 | IPR019787 | - | |
| Seca4g07947 | 98 | SUPERFAMILY | FYVE/PHD zinc finger | 1 | 46 | IPR011011 | - | |
| Seca4g07947 | 98 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 56 | IPR013083 | - | |
| Seca4g07947 | 98 | PANTHER | OS08G0421900 PROTEIN | 1 | 64 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Seca4g07947 | Seca-Chr4 | 185083426 | 185083971 | Dispersed/Transposed |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | PHD | Seca4g07947 | PHD | 3e-09 | CL0390 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Seca4g07947 | K25868 | - | gmx:100800993 | 135.576 |