Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07943 ATGGAGGATGGTTATATCTTTGATTCTCTAGATTTTGGTCACATCAACAACAACACTAATGGCAGAGTTTTTGGGGTGAAGCCAGCAACTCCAGTTTCTATCGAAAATCTTGAAAGGGTCACAATAGATGGAACAACAGAGTCTTCTTCTTCAACAGAGTGTTCCATATGTCTTGGGGTACTCTCAATTGGGTCGACAGCAATTCGCATGCCTAACCCATGTTGTCATGTCTTTCATGATGGCTGCATCATTAGGTGGCTCAATACATCTAACACATGCCCTTTGTGTCGTAGGAGTATTTAG 303 0.4191 MEDGYIFDSLDFGHINNNTNGRVFGVKPATPVSIENLERVTIDGTTESSSSTECSICLGVLSIGSTAIRMPNPCCHVFHDGCIIRWLNTSNTCPLCRRSI. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07943 100 ProSiteProfiles Zinc finger RING-type profile. 54 97 IPR001841 -
Seca4g07943 100 SUPERFAMILY RING/U-box 53 100 - -
Seca4g07943 100 SMART ring_2 54 96 IPR001841 -
Seca4g07943 100 SMART ringv_2 53 97 IPR011016 GO:0008270
Seca4g07943 100 PANTHER SI:CH211-59O9.10 28 100 - -
Seca4g07943 100 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 100 IPR013083 -
Seca4g07943 100 Pfam Ring finger domain 53 97 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07943 Seca-Chr4 185049103 185049429 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07943 19 97 C3H Transcription Factor Family AT1G14200 39.241 1.68e-13 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07943 - K11982 lang:109353994 97.8265