Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07942 ATGGATGATGCTTTTTTCTTTGATGCCTTCAACTTTGTTCATGACAACAACGTGCAGAACAATGGTGGAGTTTTAGATCAGGTGAATCCCGCAACTCGTGCTTCTATTGAGAATCTTGAAAGGATCACGATAGATGGAACAAATGCAGATTCTATGTCTGTGTGCTCCATATGTCTTGAGGTGTTCTCAATTGGGTCAACAGCAATTCGCATGCCTAACCCATATTGTCATCTCTTTCATGAACATTGCATCATTAGGTGGCTCAACACTTGTAACACATGCCCTTTGTGTCGCAGGAGCATCTAA 306 0.4183 MDDAFFFDAFNFVHDNNVQNNGGVLDQVNPATRASIENLERITIDGTNADSMSVCSICLEVFSIGSTAIRMPNPYCHLFHEHCIIRWLNTCNTCPLCRRSI. 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07942 101 SUPERFAMILY RING/U-box 35 101 - -
Seca4g07942 101 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 101 IPR013083 -
Seca4g07942 101 PANTHER SI:CH211-59O9.10 27 101 - -
Seca4g07942 101 Pfam Ring finger domain 55 98 IPR001841 -
Seca4g07942 101 ProSiteProfiles Zinc finger RING-type profile. 55 98 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07942 Seca-Chr4 184810433 184810759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07942 11 98 C3H Transcription Factor Family AT1G14200 32.955 8.99e-13 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07942 - K22378 lang:109353994 103.99