Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07927 ATGGTTTCTCTCAAGGGAAAATCTACAGCGGGCTCAACGCGAGCCTCAATAGGTGGCCAATCTCGTCCAAGTGTGGTTGGTAGGAATTTCAAGGTTTTTTCGGAAAATGACCGGATTAAAGCTGGTGATGGGCTCATGACATCTGCTACTGCAAGAGAAGCAGGTGCAACTTCAAGGAGTGCTACAATAGCTAGCAAAAGGGTTGTTTTGAATAGCACCTGTAATCCAAAGGGTGGTTTCATAAGTATGGAGAAAAGTAGTGGCAAATATGGTACTTCTGCAAATATGAATGCGAGAAAGGCATTGGCTGATGTTACCAATGTTGGAGGAAACTCTGCAACAGCTATTAGGCTTAATAGCTCCAAAATTAAGGTTTCAGCAGGTTCAAGCACTAAAAAAGCGGGTGTCTCTTTGAGGAAGTCATTCACGGGAAGAGTGCAAAAAAATACTGGCCAAGGTGAAGTTCAGTTAGGTGCTCCCAATAGAGTAGGCACAGATTCAACGGCATCTTTAGATGGTCAGAAGAATAATACAGATGGAGGCCCATCAGTAATTGTCACAAAGGACAGGTTTGCAAGGAAGCCTTTGTTGCCTACAACTGCAAGCACTTCAAGGAAGTCTTTACCAGTTCCAACTAGGAGGGTAAACAGGGCAGATGTAAGTAACACAGAGGAAAATTCTGGATGTTCTGAAACAGCCAATGGCCAAAGTGGTATCCCTACTAAGACAACAGTTAGAAGAGTTAGTTCCCAACTAAATAATGCAAGAAGCCATCTATGGAAGACTCGAGTGAGTGATGGCTTTGTTCAAATGGTTCAAACTAATACTGTACAAGCATCCTCAAGGAAGTCCACCAAGCCTATTGCTAAGACCACGCTCAAGGCTTCTACATCTCAAAGGACTTTAAAAGCTAAATCCATGTACGTTCAGATCAAACCAAAATCAACTGCTACAATGTCATGTAAGGACAAAGGAAAAACTGCTATAAGAACTGGTATAATGTCATCTAAGGATGAAGGAAAAACTGCTACAATGTCATCTAAGGATGAGGAAACTGTTTCTTTGTCTCTTCCTGAGAATGGTTTGGTGATAGCTTCTGATGATGCAAATGAAAGATATCTTCCCTCTAAGGGAGAGAACAACTTGAAAACAAATTTGTCAGAGTCCATTCCAAGGAAAAAGTCCACCCGTCGGAAATCTTATACAACTTCATTGATGGAAAGATCTAAGTGTCTCAAGGAAAGTGGTGAAGCTAGGGAGCAGGATAACCTACCAAATATAGATAATGAATGTAATCAACTAGAAGTTTCTGAATACATTGATGAGATATATCAATACTATTGGGTTACTGAGGCACATAGTCAAGCTCTGGCAAATTACATGTCAATTCAGACAGACATTACTCCTCAGATGCGGGGCATATTGATCAACTGGCTAATTGAAGTGCACTTCAAATTTGATTTGATGCCTGAAACACTGTATCTCACAGTGACATTGTTGGATCAATATCTTTCCCAAGTGACTATCAAAAAGACTGATATGCAGTTAGTTGGTCTTACGGCGCTTTTGCTGGCTTCAAAGTATGAGGATTTTTGGCATCCAAGGGTCAAAGATTTAATTAGCATCTCAGCGGAGTCATATACTAGAGATCAAATGCTTGGAATGGAGAAGCTTATTCTTAGAAAATTGAAGTTCCGTCTTAATGCACCTACTCCTTACGTTTTTATGGTGAGGTTTCTCAAGGCTGCACAATCAGATAAGAAGCTTGAACACATGGCATTCTTTCTCATTGACTTATGCTTAGTTGAATACGAAGCTTTAGCATTCAAGCCTTCATTACTATGTGCATCAGCTCTCTATGTTGCACGATGTACTTTGCAAATAACTCCACCATGGACCCCACTGCTTCACAAGCATGCGCGTTATGAAGTTCCACAGCTCAGGGATTGCGCGGATATGATATTGAAGTTCCATAAAGTTGCCAGGATGGGAAAATTAACAGTTACATATGAAAAATACTCTAGACAGGATTTCAGCAGGGTTGCAGCTGTGGAACCGTTGGATAGGCTTCCCTTGTAA 2079 0.4098 MVSLKGKSTAGSTRASIGGQSRPSVVGRNFKVFSENDRIKAGDGLMTSATAREAGATSRSATIASKRVVLNSTCNPKGGFISMEKSSGKYGTSANMNARKALADVTNVGGNSATAIRLNSSKIKVSAGSSTKKAGVSLRKSFTGRVQKNTGQGEVQLGAPNRVGTDSTASLDGQKNNTDGGPSVIVTKDRFARKPLLPTTASTSRKSLPVPTRRVNRADVSNTEENSGCSETANGQSGIPTKTTVRRVSSQLNNARSHLWKTRVSDGFVQMVQTNTVQASSRKSTKPIAKTTLKASTSQRTLKAKSMYVQIKPKSTATMSCKDKGKTAIRTGIMSSKDEGKTATMSSKDEETVSLSLPENGLVIASDDANERYLPSKGENNLKTNLSESIPRKKSTRRKSYTTSLMERSKCLKESGEAREQDNLPNIDNECNQLEVSEYIDEIYQYYWVTEAHSQALANYMSIQTDITPQMRGILINWLIEVHFKFDLMPETLYLTVTLLDQYLSQVTIKKTDMQLVGLTALLLASKYEDFWHPRVKDLISISAESYTRDQMLGMEKLILRKLKFRLNAPTPYVFMVRFLKAAQSDKKLEHMAFFLIDLCLVEYEALAFKPSLLCASALYVARCTLQITPPWTPLLHKHARYEVPQLRDCADMILKFHKVARMGKLTVTYEKYSRQDFSRVAAVEPLDRLPL. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07927 692 PANTHER CYCLINS 401 674 IPR039361 -
Seca4g07927 692 SMART Cyclin_C_2 570 687 IPR004367 -
Seca4g07927 692 CDD CYCLIN_CCNB1-like_rpt1 436 565 - -
Seca4g07927 692 FunFam Cyclin N-terminal domain containing 2 457 565 - -
Seca4g07927 692 CDD CYCLIN_AtCycB-like_rpt2 570 686 - -
Seca4g07927 692 MobiDBLite consensus disorder prediction 144 241 - -
Seca4g07927 692 Gene3D - 456 562 - -
Seca4g07927 692 FunFam putative cyclin-B3-1 isoform X3 566 691 - -
Seca4g07927 692 SUPERFAMILY Cyclin-like 570 689 IPR036915 -
Seca4g07927 692 Gene3D - 563 690 - -
Seca4g07927 692 SMART cyclin_7 477 561 IPR013763 -
Seca4g07927 692 SMART cyclin_7 574 656 IPR013763 -
Seca4g07927 692 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g07927 692 Pfam Cyclin, N-terminal domain 442 568 IPR006671 -
Seca4g07927 692 SUPERFAMILY Cyclin-like 432 568 IPR036915 -
Seca4g07927 692 MobiDBLite consensus disorder prediction 144 183 - -
Seca4g07927 692 Pfam Cyclin, C-terminal domain 570 686 IPR004367 -
Seca4g07927 692 MobiDBLite consensus disorder prediction 221 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07927 Seca-Chr4 183767000 183777580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07927 21 692 Core Cell Cycle Gene Families AT1G16330 43.314 4.62e-166 490
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07927 K21777 - gmx:100808850 920.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07927 4 183767000 183777580 Seca4g07927 4 183767000 183777580 ECH