Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07926 ATGAAGCAGCTTCCAACGCTCGTCATGAAATCCCTCTCAGTTTGTTCTTTACCCGCCACTACAACCACCCTTCGAGAAATTGCTTCTCATCAACCCAAAGGTGTTGCAAAGGTTGTACTAAAAAAGGGGAAGACACAACTCTTTAAGGATGGCAACCCAATGGTGTACAGTGGAGCTGTTGATAGAATAATTGGGAGGCCGCCTCCTAAGACTGGAGATATTGTTCTGGTAGCAGATGGAACTGAGAAACCAATAGGGTGGGGCTTGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTCATGCAGCTTGAAGATGAAACTACCAGTGATTCATCATGTGCATTGAACATGGAGAAACTGCTTGAAACAAGAATTGATGCAGCTGTTGAATTGCGTAGAAGGTTGGGTCTTCCTTCAGCCCATACAAATGCATATCGTCTAATCAATAGTGAGGGTGACAGATTATCGGGGTTGATAATTGATGTCTTTGGAGATGTAGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAATCAGAGATAGAAGCATGCATCAGGAAAATCAACTATATCAATCATATAAATTGGAGGCCATCTGTCGATATATTAAAGGAAGATGGAGTTAATGTGTCTGATTTAAAGGAAATCCATTCATCTTCTTGTCCTGAAAGAACAAAGATTATGGAAAATGGAGTTGTGTACACAATTTCACTGAAGGGCCAGAAGACAGGATTCTATGCAGATCAGCGCGAGAATCGTGAGTTTATATCAAGAATTTCAGATGGTCAAAAAGTTCTTGATCTTTGTTGCTATAGTGGTGGGTTTTCTCTTAACGCAGTGCGTGGAGGTGCTCTAAATGTCACTGGTGTTGACACATCACTGCCAGCTCTGGAGCTTGCTAAAGAAAATGTTTTACTTAACAACATTGGTCCAGGAAGAATATCCTTTTTGAAAGAAGATGCAACTGAGTTTATGAAGAGTGCTCTCTTGAGAGATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAACTGGCACCAACAAAGAAGGTTCTACATGGTGCATCTGGTATGTACAGAAATTTGAATTCGTTTGCCATGCAACTTACAAAAAGAGGTGGTCTTTTGATGACCTGTTCCTGTTCTGGAGCTGTGACCCAAAGTGGGATATTTCTTCGTATCCTTCAGGGTGCAGCATCCATGGCAGGGAGGAAAATTACTGTTGTAAGGCAGGCTGGAGCAGCTTGTGATCATCCTATTGATCCATCATATCCAGAAGGCGCATACCTATCCAACGTTTTATTAAGAGTTTCATGA 1323 0.4187 MKQLPTLVMKSLSVCSLPATTTTLREIASHQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVLVADGTEKPIGWGLYNSVSMFCVRLMQLEDETTSDSSCALNMEKLLETRIDAAVELRRRLGLPSAHTNAYRLINSEGDRLSGLIIDVFGDVAVVASSAAWVEKYKSEIEACIRKINYINHINWRPSVDILKEDGVNVSDLKEIHSSSCPERTKIMENGVVYTISLKGQKTGFYADQRENREFISRISDGQKVLDLCCYSGGFSLNAVRGGALNVTGVDTSLPALELAKENVLLNNIGPGRISFLKEDATEFMKSALLRDESWDIVIIDPPKLAPTKKVLHGASGMYRNLNSFAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGAASMAGRKITVVRQAGAACDHPIDPSYPEGAYLSNVLLRVS. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07926 440 SMART pua_5 36 130 IPR002478 GO:0003723
Seca4g07926 440 CDD PUA_RlmI 36 106 IPR041532 GO:0003723
Seca4g07926 440 Gene3D PUA domain 35 106 IPR036974 GO:0003723
Seca4g07926 440 Pfam PUA-like domain 38 101 IPR041532 GO:0003723
Seca4g07926 440 Gene3D RNA methyltransferase domain (HRMD) like 117 220 - -
Seca4g07926 440 Gene3D Vaccinia Virus protein VP39 227 440 IPR029063 -
Seca4g07926 440 Pfam S-adenosylmethionine-dependent methyltransferase 218 396 IPR019614 GO:0008168
Seca4g07926 440 SUPERFAMILY PUA domain-like 37 105 IPR015947 -
Seca4g07926 440 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 123 436 IPR029063 -
Seca4g07926 440 CDD RlmI_M_like 120 209 - -
Seca4g07926 440 CDD AdoMet_MTases 266 381 - -
Seca4g07926 440 PANTHER RIBOSOMAL RNA LARGE SUBUNIT METHYLTRANSFERASE 20 439 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07926 Seca-Chr4 183720729 183732315 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07926 - - gmx:100796633 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07926 4 183720729 183732315 Seca4g07926 4 183720729 183732315 ECH