Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07924 ATGGAAAGAATGTTCCCTCCTAATCCTAAGAAACCCTCAAATTTGAATTCCCATGACAGACCCATGTGTGTCCAAGGTGACTCAGGCCTTGTCCTCACCACTGACCCAAAGCCACGCCTTCGTTGGACCGTTGAGCTTCATGAGCGTTTCGTTGATGCTGTTACTCAACTTGGAGGACCTGATAAGGCTACTCCTAAAACAATTATGAGGGTTATGGGTGTGAAGGGTCTCACCCTTTACCATCTCAAGAGCCACCTTCAGAAATTCAGGCTTGGAAAGCAGCCCCACAAGGAATTCAATGAGCACTCAATTAAGGATAGCATGAGAGCTTCGGCTTTAGAACTGCAACGAAATACTGGCTCCTCTTCTGCCATGATTGGCCGCAACATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAACAACTAGAGGTTCAGAAGCATCTTCAGCTGAGGATAGAGGCTCAAGGAAAATACATGCAGAGTATATTGGAGAAGGCTTATCTCACACTTGCAGGTGAAAACAACATGGCAACTGCTGCTACAAACATAAAGGGTATTGGAGCTCATCAAGGCATGATCCCTGACATGAAAGAATTTGGTTCCCCTCCTCTTAATTTTTCTTCTTTTCAAGATCTTAACCTTTATGGTGGTAGTAGTAGTAGTGGGGACCAACTTGATCTTCATCAGCAGAACATGGATGGGTTTATGCCAACTAATGAGAATTTATTTGTGGGGAAGAAAAGGCCTAACCCTTATACTGGAAAAAGCCCATTGATTTGGAATGATGATCTCAGGCTTCAAGATTTGGGAACGGCTTCATCATGCCAAGATGTTACTTTCAAAGGTGACCAGATTTAA 867 0.4383 MERMFPPNPKKPSNLNSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNEHSIKDSMRASALELQRNTGSSSAMIGRNMNEMQMEVQRRLHEQLEVQKHLQLRIEAQGKYMQSILEKAYLTLAGENNMATAATNIKGIGAHQGMIPDMKEFGSPPLNFSSFQDLNLYGGSSSSGDQLDLHQQNMDGFMPTNENLFVGKKRPNPYTGKSPLIWNDDLRLQDLGTASSCQDVTFKGDQI. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07924 288 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g07924 288 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 94 IPR017930 -
Seca4g07924 288 SUPERFAMILY Homeodomain-like 36 92 IPR009057 -
Seca4g07924 288 Pfam MYB-CC type transfactor, LHEQLE motif 133 170 IPR025756 -
Seca4g07924 288 Pfam Myb-like DNA-binding domain 40 88 IPR001005 -
Seca4g07924 288 FunFam Myb family transcription factor 36 94 - -
Seca4g07924 288 NCBIfam myb-like DNA-binding domain, SHAQKYF class 37 92 IPR006447 GO:0003677
Seca4g07924 288 Gene3D - 36 94 - -
Seca4g07924 288 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 16 195 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07924 Seca-Chr4 183461233 183463537 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07924 10 280 G2-like Transcription Factor Family AT1G79430 61.092 1.86e-111 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca4g07924 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07924 - - gmx:100807793 439.499