LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g07921	ATGGCTAACATCGTGGTCTACTTCTTGATATTACTTCACATTTCCCTGAGCTTTGATTTGACTCAATCAGCACCTAAAGGGTACGTGACAGTGGATGAAAAACATGGAAGGAAATTGTATTACTATTTTATTGTGTCAGAAGGTAAACCGTCTACGGACCCTGTGGTTCTATGGCTTAATGGTGGACCAGGGTGCTCTAGTTTCTATGGCTTCATATATGAGCATGGTCCATTTAAGTTTGAAAAACCAAAGACTAAGGGAACCCTGCCTACATTGCAGCTCAATCCATACAGTTGGTCAAAGGTTTCCAACATTATATATTTGGATTCTCCTGCTGGAGTGGGGTTTTCATACTCAAAGAATCAATCTGATTACAAAACTGGAGATGTAAAGACAGCCTCTGATACACATACCTTTCTCCTTAAGTGGTTTGAACTATACCCTGAGTTCCTTTCCAACCCCTTATTCATATCTGGAGAGTCATATGGTGGAATTTATGTACCTACTCTAGCTCAAAAAATAGTGGAAGGTATTGAAGCGGGTAAAAAACCCAGTCTGAATTTCAAGGGCTACATGATTGGAAATCCTCTTACTGATAACAATTTTGATTTCTATTCTACATTTCCATTTGCACATGGGATGGGTCTTCTCAATGATGATTTGTTTGAGGAGGCCACAAGACACTGCAAGGGGAAATCATATAATCCAACTCCCCTAGAGTGCTTAAAAGTCTTGTCAAAACTTTCTAAGGTACTTGGAGGGTTGAACCCATATAACATTATGGAACCATGTTATGATGGTGGAGTGGACAATAGAAAAACCCATTCTTTGTTGCCATTCAGCTTTAGGCAGTTGCGTGAGACTGATGGGCCTTTACCTATGATAAAAGCAATGTTTGGTCATGCTTGGCCCCTTAGAGCTCCTTTGAAAAATGTAGTACCAACTTGGCCACAATTGAACACAATTATTCCATGCACTGATGATGAGGTTGCAACCTCATGGTTGAACAATCATGAGGTTAGGAGAGCAATTCACACAGTAAAGGAAAGTGTGGTAAGTAAATGGAGCTCGTGTACATCCCAAATTGATTATTATCATGACACTGGGAGCATGATTGATTACCACAAAAACCTAACTTCCAAAGGATATCGAGCACTTGTATACAGTGGTGATCATGACATGGTGATTCCATTTACTGGAACTCAAGCATGGATAAGATCAATTGGATATAAGACTGTTGATGAATGGAGGCCTTGGCTCGTTAATGATCAAATTGCTGGGTTTACACAAGGATATGACAAAAATCTTACTTTTCTTACCATAAAGGGAGCTGGGCATGCTGTTCCAGAATATAAACCACAAGAGTCATTGAATTTTTTCAAACGTTTCGTGGCTGGATTGCCAGTATGA	1410	0.3979	MANIVVYFLILLHISLSFDLTQSAPKGYVTVDEKHGRKLYYYFIVSEGKPSTDPVVLWLNGGPGCSSFYGFIYEHGPFKFEKPKTKGTLPTLQLNPYSWSKVSNIIYLDSPAGVGFSYSKNQSDYKTGDVKTASDTHTFLLKWFELYPEFLSNPLFISGESYGGIYVPTLAQKIVEGIEAGKKPSLNFKGYMIGNPLTDNNFDFYSTFPFAHGMGLLNDDLFEEATRHCKGKSYNPTPLECLKVLSKLSKVLGGLNPYNIMEPCYDGGVDNRKTHSLLPFSFRQLRETDGPLPMIKAMFGHAWPLRAPLKNVVPTWPQLNTIIPCTDDEVATSWLNNHEVRRAIHTVKESVVSKWSSCTSQIDYYHDTGSMIDYHKNLTSKGYRALVYSGDHDMVIPFTGTQAWIRSIGYKTVDEWRPWLVNDQIAGFTQGYDKNLTFLTIKGAGHAVPEYKPQESLNFFKRFVAGLPV.	470

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g07921	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	436	449	IPR001563	GO:0004185\|GO:0006508
	Seca4g07921	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	95	107	IPR001563	GO:0004185\|GO:0006508
	Seca4g07921	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	108	118	IPR001563	GO:0004185\|GO:0006508
	Seca4g07921	469	PRINTS	Carboxypeptidase C serine protease (S10) family signature	143	168	IPR001563	GO:0004185\|GO:0006508
	Seca4g07921	469	FunFam	Carboxypeptidase	10	285	-	-
	Seca4g07921	469	Pfam	Serine carboxypeptidase	25	465	IPR001563	GO:0004185\|GO:0006508
	Seca4g07921	469	Gene3D	alpha/beta hydrolase	13	467	IPR029058	-
	Seca4g07921	469	ProSitePatterns	Serine carboxypeptidases, serine active site.	157	164	IPR018202	GO:0004185
	Seca4g07921	469	FunFam	Carboxypeptidase	324	468	-	-
	Seca4g07921	469	SUPERFAMILY	alpha/beta-Hydrolases	18	468	IPR029058	-
	Seca4g07921	469	FunFam	Carboxypeptidase	371	466	-	-
	Seca4g07921	469	ProSitePatterns	Serine carboxypeptidases, histidine active site.	436	453	IPR033124	GO:0004185
	Seca4g07921	469	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	24	453	IPR001563	GO:0004185\|GO:0006508

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g07921	Seca-Chr4	183378897	183384643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g07921	330	469	Calmodulin-binding Proteins	AT2G22960	47.857	1.22e-43	150

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g07921	K16296		-	gmx:100792057	657.521