Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07896 ATGCAGCCTCGCCGGAGAAGGTGTTTCCGGCCATCGGTGGTGAGGGAATCGAAGCATTTTCTGAAGACCATACTTCCCTCACCCATTCATGCCAACCAAATGAGAATTCCTGAGGACTTTGTAACAAGATATGGTAATGAACTATCGAGTGTTGCTAGAATTAAAGTTCCCTGTGGTCGTGTTTGGAAAATGGGATTGAAGAAATGTGGTAAACACATTTTGTTTTGCAACAAGTGGGAAGAGTTTGTGGAATACTATTCTATCAGTTATGGTTGCCACCTAGTTTTCAAATATAAAGGGAATTCAAAGTTTAATGTTCTCATATTTGATGCAACTTCTGTTGAGATTTACTATCCATGCAAAAACAATCACCCAAAGTTTCCTAGGATAAGGGCCAGGGTTGATCATCAGGACTCTAGCCATCAGACAAGAATGTCAAAAACTGCTTCCAAAAAAGCAAAGGATGCTGCTTCTGCTTCCAATAAAGAGCCAAAAAACCCTTATTTTACTTCAACCATAAAGAGACAACGTGTGAAGTATGTTCCTGTTGAATTTGCTCAAAAGTATCTCAAGCCAAAGGTTCCTATAAAGCTTCAAACTTCTAGTAGAGAGCAGTGGGATGTTTCTTGCGTAAAACATTGTGACAAGGCAATCATAATGGCAAAGGGAATCCCTAAATTTGCTAGAGAAAACAAACTCTCAGAAGGAGATTCCTTTGTGTTTGAGTTGATCAAGAGGGAGCCACTTGTCCTGAAAGTTACACCGTTTTCATGCAATTGA 780 0.3974 MQPRRRRCFRPSVVRESKHFLKTILPSPIHANQMRIPEDFVTRYGNELSSVARIKVPCGRVWKMGLKKCGKHILFCNKWEEFVEYYSISYGCHLVFKYKGNSKFNVLIFDATSVEIYYPCKNNHPKFPRIRARVDHQDSSHQTRMSKTASKKAKDAASASNKEPKNPYFTSTIKRQRVKYVPVEFAQKYLKPKVPIKLQTSSREQWDVSCVKHCDKAIIMAKGIPKFARENKLSEGDSFVFELIKREPLVLKVTPFSCN. 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07896 259 CDD B3_DNA 18 110 IPR003340 GO:0003677
Seca4g07896 259 ProSiteProfiles B3 DNA-binding domain profile. 19 112 IPR003340 GO:0003677
Seca4g07896 259 ProSiteProfiles B3 DNA-binding domain profile. 164 257 IPR003340 GO:0003677
Seca4g07896 259 Gene3D - 145 259 IPR015300 -
Seca4g07896 259 CDD B3_DNA 180 257 IPR003340 GO:0003677
Seca4g07896 259 Gene3D - 12 113 IPR015300 -
Seca4g07896 259 SMART B3_2 20 112 IPR003340 GO:0003677
Seca4g07896 259 SMART B3_2 168 259 IPR003340 GO:0003677
Seca4g07896 259 MobiDBLite consensus disorder prediction 131 166 - -
Seca4g07896 259 Pfam B3 DNA binding domain 174 253 IPR003340 GO:0003677
Seca4g07896 259 Pfam B3 DNA binding domain 20 111 IPR003340 GO:0003677
Seca4g07896 259 PANTHER B3 DOMAIN-CONTAINING 12 247 - -
Seca4g07896 259 SUPERFAMILY DNA-binding pseudobarrel domain 17 111 IPR015300 -
Seca4g07896 259 SUPERFAMILY DNA-binding pseudobarrel domain 163 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07896 Seca-Chr4 182878843 182881014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07896 138 259 B3 DNA Binding Superfamily AT3G18990 35.156 2.88e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g07896 B3 1.9e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07896 - - mtr:120575755 262.692