Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07891 ATGGGGAATATTGAATTCAAGACATTAACATTGAATGATCTTATGTCTTTTCACTTTCCGAACCTTGAAGTGGCATTTATCTTTTATCGTTGGTTTGCAAGATTCAAAGGTTTTGCAGCTCGGAAGGACCGGACAGTGAAAAACAAGCAGAAGGAAGTGATACAACAAACATTTGTTTGTTATAGGGAAAGTGGAAAGACACGAAAGCATAGTGTTCTGAAACGCCCCCCACGCAAGAGTATTCGTTGTGGATGCCAAGCCAAGTTCAGGCAGGTGGTCCAAAGTGCTAGTAGGGTGAGGGTCACAGGTGAAAAACGTATTGGAAGTGGGTTCATTTACTTTGTATCCAAATACCGGAGGGCGGACAAAGAGTGGCATGTCACCTTTTGGCCCTCAAATATTGAATTCAAGTGTTCTTGTCAGAGAATGGAGTCTTTAGGTATCCCTTGTGATCACATTGTTGGTGTAATGGATTTTTTAAACATGGTTGGAATCCCGCAGTCACTTATACTAAATAGGTGGACAATTTGTGCAAAGGAATCACTTGATCAGGGAGCATCAGGCGGGTGGGATCCTTTGATGGTGTGTCGGTATGATGCACTTCGAATGTCATCCAAACGTTTGATGAAAGTTGCATGCAGGACTAGTAAGGATTTTTCTGAAGTAATGACTATCTTTAAAAATGAAAGTGAGACTTGGGAGGCCAATCAGCGGAGGCCTAGTTGCAATGTTCGCAATGAGGAAGATGTGATTACAGAAAATATTAGGAACCCTACTGTTGTAAGGACGAAGGGTTGCAGAGGTGGTAGCTCTATAGGAAATTGTCCAGGTATGAGGACCTTACATTGTAGTGCATGTGGCCTTGTTGGTCACAACAAGCAAACTTGTTTAAGGAGAAGGACGGTGGACGAAGAAGGCATGGCCATAGGAGGAGCTGCTATTGACTGGTAA 951 0.4301 MGNIEFKTLTLNDLMSFHFPNLEVAFIFYRWFARFKGFAARKDRTVKNKQKEVIQQTFVCYRESGKTRKHSVLKRPPRKSIRCGCQAKFRQVVQSASRVRVTGEKRIGSGFIYFVSKYRRADKEWHVTFWPSNIEFKCSCQRMESLGIPCDHIVGVMDFLNMVGIPQSLILNRWTICAKESLDQGASGGWDPLMVCRYDALRMSSKRLMKVACRTSKDFSEVMTIFKNESETWEANQRRPSCNVRNEEDVITENIRNPTVVRTKGCRGGSSIGNCPGMRTLHCSACGLVGHNKQTCLRRRTVDEEGMAIGGAAIDW. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07891 316 ProSiteProfiles Zinc finger SWIM-type profile. 113 161 IPR007527 GO:0008270
Seca4g07891 316 Pfam SWIM zinc finger 137 158 IPR007527 GO:0008270
Seca4g07891 316 Pfam FAR1 DNA-binding domain 28 102 IPR004330 -
Seca4g07891 316 SMART 26again6 136 163 IPR006564 GO:0008270
Seca4g07891 316 PANTHER OS01G0519700 PROTEIN 113 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07891 Seca-Chr4 182850134 182852242 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g07891 FAR1 7.7e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07891 - - tpra:123905832 167.548