Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07886 ATGGGGAGGGGAAAGATTGAGATCAAAAGAATTGAGAACACAACAAATCGGCAAGTGACATTCTGTAAGCGAAGGAATGGGCTTCTGAAGAAAGCTTATGAGCTTTCAGTGCTGTGTGATGCTGAAGTGGCTCTCATTGTCTTCTCCAGCCGTGGCCGTCTTTATGAGTATTCTAACAACAACATAAGGTCAACTATTGAGAGGTACAAAAAAGCATGTTCAGATCATTCAAACACAAACACTACCACCGAAATTAATGCTCAGTATTATCAACAAGAATCTGCAAAGCTGCGACAGCAAATACAGATGCTGCAAAATTCTAACAGGCACTTGATGGGAGATGCCTTAAGCACACTGACTGTGAAGGAACTTAAGCAGCTGGAGAACAGACTTGAAAGAGGAATCACTAGAATCAGATCTAAGAAACATGAGATGCTACTGGCAGAAATTGAATACTTTCAGAAAAGGGAGATTGAGCTGGAAAATGAAAATCTTTGCCTTCGTACTAAGATAACTGATGTTGAGAGGCTTCAGCAAGTGAACAACATGGTTTCTGGACCAGAGCTGAATGCCATTCAGGCATTAGCTTCTCGTAATTTCTTCAATCCAAACATGATGGAAGGTGGAACTGCCTACCCTCAATCAGACAAGAAGATTCTTCATCTTGGGTGA 672 0.4137 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDHSNTNTTTEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGITRIRSKKHEMLLAEIEYFQKREIELENENLCLRTKITDVERLQQVNNMVSGPELNAIQALASRNFFNPNMMEGGTAYPQSDKKILHLG. 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07886 223 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 Pfam K-box region 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g07886 223 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Seca4g07886 223 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Seca4g07886 223 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 Coils Coil 124 144 - -
Seca4g07886 223 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Seca4g07886 223 Coils Coil 87 107 - -
Seca4g07886 223 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
Seca4g07886 223 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g07886 223 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g07886 223 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07886 Seca-Chr4 182763420 182771987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07886 1 223 MADS-box Gene Family AT4G09960 76.087 2.86e-122 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca4g07886 K-box 9.4e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07886 K09264 - gmx:100301905 422.55