Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07883 ATGGCTACATGGAAGATTTCTCCTGCTCTGGCTGCTGGTTCTGCTGCAATATTGAAGCTATTTGAGTTAGCATATGTGACCTGTTTGGAGCGTGTTGTATCGTATGAAACTTCCATTAAAGATTCTTTTTCTAGTATACTTGAAATTGCTTCTAACAATGTTTTTGAAGATTTCAAGCTAACTATAGACAGGGATGGTTCTCTAATAAATGAAGTTGACCTCTGGTATGTCCGCCAAAATGTATCTAAACAAATTGTTCTGGAGCATAGAACTCCTTTAATGGTTGCTGCTACCTATGGGAGTATTGATTTTTTAAAGCTTATACTCTTATGTCCAGAGGCTGATGTAAATTTCTCTTATGGGACTGATAAAAGCATTGCCCTTCATTGTACTGCTTCAAGTGGTGTAGTTAATGCAGTTGATATTGTGAAACTGCTTTTATCACCTGGCGCTGATATCAGTTGTGTCGATGCTAATGGAAATCTTCCTCTTGATGTTATTGTTGTTCCTCCAAAGCTCCAAGGTATGAAAACAATGCTTGAAGAATTTCTCTCATATTGTGTTTTTGATGGGTCTGTTAATGACTGCTCCCATCCAGTTTCGGCTAATTCATCCAGTCCTGGTTTAGCTGCTATTTTATCATCACTTGATAATGGGTTGCCATCCTCTCCTGTGGCCCCAAAGTGTACTGACACAGCTTTCAATTCTGCATCAGACAAGAAAGAATATCCAATTGATCACATTGACACTTGCAGTGAGGATGGATTTCTGAATTTGCTTACTGATGGCTATGATTACCATGGAGGAGGCAATGTCTTTGTTATTTTCAGTTTCCTTTCTTGGTTTCAAGTTGGTATTGGTTGA 864 0.3854 MATWKISPALAAGSAAILKLFELAYVTCLERVVSYETSIKDSFSSILEIASNNVFEDFKLTIDRDGSLINEVDLWYVRQNVSKQIVLEHRTPLMVAATYGSIDFLKLILLCPEADVNFSYGTDKSIALHCTASSGVVNAVDIVKLLLSPGADISCVDANGNLPLDVIVVPPKLQGMKTMLEEFLSYCVFDGSVNDCSHPVSANSSSPGLAAILSSLDNGLPSSPVAPKCTDTAFNSASDKKEYPIDHIDTCSEDGFLNLLTDGYDYHGGGNVFVIFSFLSWFQVGIG. 288
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07883 287 ProSiteProfiles Ankyrin repeat profile. 123 158 IPR002110 GO:0005515
Seca4g07883 287 PANTHER UNKEMPT FAMILY MEMBER 76 169 IPR045234 -
Seca4g07883 287 SMART ANK_2a 88 118 IPR002110 GO:0005515
Seca4g07883 287 SMART ANK_2a 123 155 IPR002110 GO:0005515
Seca4g07883 287 SUPERFAMILY Ankyrin repeat 42 168 IPR036770 -
Seca4g07883 287 Pfam Ankyrin repeats (3 copies) 80 155 IPR002110 GO:0005515
Seca4g07883 287 Gene3D - 24 181 IPR036770 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca4g07883 Seca-Chr4 182450915 182451778 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07883 40 246 C2H2 Transcription Factor Family AT5G12850 48.131 8.89e-47 164