Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07861 ATGGAGCGGGAAGGTCCTCCCGCAAACGATCTGTGTTCAGTTTGCCATGGCAACTTTCACATTCCTTGCCAAGCCAATTGCTCTCACTGGTTCTGCGGTAACTGTATAATGCTTGTTTGGCAGCATGGATCAGGTATCCAACCTTGTAAATGCCCTCTCTGTCGCCGTCACATTACTCTCTTGGTTCCTACTGAACACTCCTTATCCCAACGTCAAGACCCTCAAGTTGCTCAGATTCTCTCCAAGATACAAACCTATAATCGCTTCTTTGGTGCCCGTCCAACTGGTCCCCTTCAAAGAATTCAAGATCTCCCCTTCCTGTTACGGAGGCTCATGCGGGAATGTTTGGACCCTCAAAGATCCCTTCCTCTTGTCATCAGAGCTCGTGTTTATATTGCAATGATACTAAGTGCTGTATACATCTTCAGCCCTATTGACATCATTCCTGAAGGGATATTGGGAATAGTTGGTCTCTTGGATGATCTCCTAATTGTGCTCATCTTTTTCCTGCATGTTGCTGCTCTTTATAGATCGGTACTTTACCTCCGTCATGGGGGTTCCTGA 564 0.4645 MEREGPPANDLCSVCHGNFHIPCQANCSHWFCGNCIMLVWQHGSGIQPCKCPLCRRHITLLVPTEHSLSQRQDPQVAQILSKIQTYNRFFGARPTGPLQRIQDLPFLLRRLMRECLDPQRSLPLVIRARVYIAMILSAVYIFSPIDIIPEGILGIVGLLDDLLIVLIFFLHVAALYRSVLYLRHGGS. 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07861 187 PANTHER UNCHARACTERIZED 3 184 IPR038896 GO:0061630
Seca4g07861 187 SUPERFAMILY RING/U-box 10 63 - -
Seca4g07861 187 ProSiteProfiles Zinc finger RING-type profile. 12 55 IPR001841 -
Seca4g07861 187 Pfam Protein of unknown function (DUF1232) 132 166 IPR010652 -
Seca4g07861 187 ProSitePatterns Zinc finger RING-type signature. 27 36 IPR017907 -
Seca4g07861 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07861 Seca-Chr4 181784714 181786790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07861 37 187 C3H Transcription Factor Family AT1G72175 74.172 2.96e-68 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07861 K15707 - jre:109000985 290.426