Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07827 ATGGATACGTCTGCCAATACATGTGAGATAGTGGAATCAAGGGATGAGATAATTTCTGAGTTCAAAACAGATGAAAAACCAGAGAGTAGTTGTTCCCACAGATCGGGAAAAAAGTATTCAATTGAGGATGATATTAATCGCCTTTTCCAAGCTATTGAGATTAAGAGTTCATCTAGAGGTCTTAGTACATCACGATCACAAAAAAGTGCTCTTAAAAGGCCAATAAAAGTCAGTTCATCTCAGGCATCAGGAATTGGCATCTCAGAGCCTGTAAGTTTGAAGCAGGCACTTAGAGGATTGTGCATCTCTCAGGCATCGGAAATGGCTGCTTTGAAGAGACAATCAAAGCCATGCAATTCATCAAGAGCATCAGAGGCTGGAACCATCAAAAAATTGTACACAGCAGTGGTAGATGAGGGGAAAGGGAACTTGGTGGAAATCTCTCTAGTGCCAGAGATATCTGCAGCTTCTGATAAATTGCCTGGTGTAGCAATATCAAGTTCAAGTGCTAATCATTCTATTCCTTTGGTTAATGCAACAAACCCAAAAGATATAACAACCAGGTTTGCTTCCCGAGATCAGATTGTTCCTCTTCCACCTGAGGTTGAGAGTGACAAACCAACAGTAGGACCTATACTTGCAAATTTGTCATCAGTTACTTCTGGAAGTGAAGAAGTGCCAGAGGTCAGAATGGATCCTGCTTCCTCAAGTAAAGCTTCTCCCAGTTCTTCAATGCTAGATAAGGGACAGGAAGCAAATTTACATTCTGCATCTTGTCCATCTAGCTCTAGCACTGGTAATGGAGTGGATAAACCCACAAGCAGTAATGCATGTTTGGCAAAGCCAATATTCAATAACATGAACTTCCTTAAGAAAAAGGTAAAGCAAGATCTATGTTCTACCTCCAGCTGCTCTACTCCATGTATGAGAAATGATATGGGTTCTAGTACAAGTAATTTGGACAAGGAGACTGGCAATTCTGATTTGAAGCATGAAGTTAAAGAAAATGATAAACCATCTCCCAGCAGTTCAAATCATAGCATTGAAGTTAACTCAATTAATGTTAGTACAGATTCAAGCAAACCTGGTTTCAGTTTGAATTGCAATAAGAGAACTAAGTTTCTAGTGACAAAAGTTGATGAGAAATCAAGATCAAAGGAAAAGGGTGAGTTCTCCCAAAGCTCAAAAAGTAGCATTGGTGAGTATAGTAGTAGCACAAGCATCAGTGAGGAGAGCAATCTAAGTGGTTCTAGTCGCAGTGGCCACAGACCTCACATGTCAAAACACTTGAGATGGGAAGCTATCCGTGCTGTTCAACAGCAGCATGGTAATTTAAATTTGAAGCACTTCAAGCTGCTAAGGAGGCTTGGTAGCGGGGACATTGGAACTGTTTATCTTGCCGAACTAATTGGTACAAGCTGTCTTTTTGCACTGAAAGTGATGGACAACGAATTTTTGGCAAGCAGGAAGAAAATGTTCAGGGCCCAAACTGAAAGAGAGATCCTTCAAATGCTGGATCATCCATTTCTTCCTACACTTTATTCCCATATCACAACAGATAAGCTCTCTTGCTTGGTTATGGAATATTGTCCAGGTGGGGATCTGCATGTGTTGCGACAGAGGCAACCATATAGGAGTTTCTCAGAACAAGCAACTAGGTTTTATGTTGCTGAGGTTCTTCTCGCCCTTGAGTATTTGCACATGCTGGGAGTTGTATATCGAGATCTAAAGCCAGAAAATATCCTAGTACGTGAAGATGGCCACATTATGCTTACAGATTTTGACTTGTCACTCAGATGTTCTGTCAATCCAATGTTAGTCAAGTCATCTTCACCTGACACGGATGCAACAAAGAAGATGTCCAGTCCCTGTTCAGATGCTAGCTGCATACACCCTTTCTGTCTCCAACCGGATTGGCAAGTCTCCTGCTTTACTCCTATTCTATTATCTGCTGGAGCAAAATCTCGAAAGATGAAGGCTGATATAGGTGCTCAAGTTGGTCCATTGCCACAGCTTGTAGTGGAGCCTACCAGTGCACGGTCTAACTCCTTCGTTGGAACCTATGAATATCTTGCTCCAGAGATAATCAAAGGTGAGGGTCATGGGAATGCTGTAGATTGGTGGACTTTCGGTATATTTTTGTTTGAGCTTTTATATGGGAAGACTCCCTTCAAGGGTCCATCAAATGAGGATACATTAGCCAATGTTGTGTCACAGAGCCTTAAGTTCCCAGGTGCTCCTATAGTCAGTTTTCATGCAAGAGATTTGATCAGAGGATTGTTGATAAAGGATCCTGAAAATCGTTTAGGTTCTGTAAAAGGTGCAGCTGAAATAAAACAGCATCCTTTCTTTGAAGGTCTAAACTGGGCTCTAATACGGTGTGCAGCACCACCAGAGCTCCCCAAGTTTCGTGACTTTGGAAATAGTTCTCTATCTATGGCTGCACAGAAGGAGAATGCAAATGATTTAGAGGATACAGAAGATTGTGAAGAGTTCGAGCTGTTTTAG 2508 0.4155 MDTSANTCEIVESRDEIISEFKTDEKPESSCSHRSGKKYSIEDDINRLFQAIEIKSSSRGLSTSRSQKSALKRPIKVSSSQASGIGISEPVSLKQALRGLCISQASEMAALKRQSKPCNSSRASEAGTIKKLYTAVVDEGKGNLVEISLVPEISAASDKLPGVAISSSSANHSIPLVNATNPKDITTRFASRDQIVPLPPEVESDKPTVGPILANLSSVTSGSEEVPEVRMDPASSSKASPSSSMLDKGQEANLHSASCPSSSSTGNGVDKPTSSNACLAKPIFNNMNFLKKKVKQDLCSTSSCSTPCMRNDMGSSTSNLDKETGNSDLKHEVKENDKPSPSSSNHSIEVNSINVSTDSSKPGFSLNCNKRTKFLVTKVDEKSRSKEKGEFSQSSKSSIGEYSSSTSISEESNLSGSSRSGHRPHMSKHLRWEAIRAVQQQHGNLNLKHFKLLRRLGSGDIGTVYLAELIGTSCLFALKVMDNEFLASRKKMFRAQTEREILQMLDHPFLPTLYSHITTDKLSCLVMEYCPGGDLHVLRQRQPYRSFSEQATRFYVAEVLLALEYLHMLGVVYRDLKPENILVREDGHIMLTDFDLSLRCSVNPMLVKSSSPDTDATKKMSSPCSDASCIHPFCLQPDWQVSCFTPILLSAGAKSRKMKADIGAQVGPLPQLVVEPTSARSNSFVGTYEYLAPEIIKGEGHGNAVDWWTFGIFLFELLYGKTPFKGPSNEDTLANVVSQSLKFPGAPIVSFHARDLIRGLLIKDPENRLGSVKGAAEIKQHPFFEGLNWALIRCAAPPELPKFRDFGNSSLSMAAQKENANDLEDTEDCEEFELF. 836
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07827 835 MobiDBLite consensus disorder prediction 392 421 - -
Seca4g07827 835 Gene3D Transferase(Phosphotransferase) domain 1 678 802 - -
Seca4g07827 835 FunFam serine/threonine-protein kinase D6PK-like 534 601 - -
Seca4g07827 835 SMART serkin_6 450 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07827 835 FunFam Serine/threonine-protein kinase D6PK-like 448 533 - -
Seca4g07827 835 SUPERFAMILY Protein kinase-like (PK-like) 423 805 IPR011009 -
Seca4g07827 835 ProSiteProfiles Protein kinase domain profile. 450 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07827 835 Gene3D Transferase(Phosphotransferase) domain 1 530 599 - -
Seca4g07827 835 Pfam Protein kinase domain 681 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07827 835 Pfam Protein kinase domain 451 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07827 835 CDD STKc_phototropin_like 448 808 - -
Seca4g07827 835 MobiDBLite consensus disorder prediction 324 339 - -
Seca4g07827 835 PANTHER FLIPPASE KINASE 1-RELATED 281 803 - -
Seca4g07827 835 MobiDBLite consensus disorder prediction 379 427 - -
Seca4g07827 835 FunFam serine/threonine-protein kinase D6PK-like 679 802 - -
Seca4g07827 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 571 583 IPR008271 GO:0004672|GO:0006468
Seca4g07827 835 MobiDBLite consensus disorder prediction 310 364 - -
Seca4g07827 835 Gene3D Phosphorylase Kinase; domain 1 448 529 - -
Seca4g07827 835 MobiDBLite consensus disorder prediction 235 273 - -
Seca4g07827 835 MobiDBLite consensus disorder prediction 340 364 - -
Seca4g07827 835 MobiDBLite consensus disorder prediction 198 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07827 Seca-Chr4 180831350 180836671 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07827 375 835 AGC Kinase Gene Family AT3G52890 66.245 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca4g07827 Pkinase 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07827 - - gmx:100784955 1392.1