Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07817 ATGGCAGCCTCAGCTTCATCCATGATATCAACCCCTGCCTTATCACCCACCATCCAAAAGCACCAAAATCATCTGAAGCCATCCAACTTGTGCTTCCAGGGCCTCAGACCCCTCACAAGGTCCACATCCTCAACCAAAGTGAGCACCTTTACCCCCAACAAAAGGGTTGCTCGTGGAGTTGTGAAAGCAGAACTCAACCCTTCTCTGGTGATAAGCCTCAGCACTGGCCTATCCTTGTTCTTGGGGAGGTTTGTGTTCTTCAACTTCCAGAGGGAGAATGTGGCAAAACAAGGCTTACCTGAGCAGAATGGGGTCACACACTTTGAGGCTGGTGACACACGTGCCAAGGAGTATGTGAGCCTCCTTAAATCCAATGACCCTGTTGGCTTCAACCTTGTTGATGTCTTGGCTTGGGGTTCTATAGGTCACATCGTTGCTTACTATATCTTGGCTACCACTAGCAATGGCTATGACCCTAAATTCTTTGGTTGA 492 0.4878 MAASASSMISTPALSPTIQKHQNHLKPSNLCFQGLRPLTRSTSSTKVSTFTPNKRVARGVVKAELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDTRAKEYVSLLKSNDPVGFNLVDVLAWGSIGHIVAYYILATTSNGYDPKFFG. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07817 163 PANTHER PHOTOSYSTEM I REACTION CENTER SUBUNIT V, CHLOROPLASTIC-RELATED 16 162 IPR016370 -
Seca4g07817 163 FunFam Photosystem I reaction center subunit V 67 162 - -
Seca4g07817 163 ProSitePatterns Photosystem I psaG and psaK proteins signature. 129 146 IPR000549 GO:0009522|GO:0015979|GO:0016020
Seca4g07817 163 Pfam Photosystem I psaG / psaK 67 157 IPR000549 GO:0009522|GO:0015979|GO:0016020
Seca4g07817 163 NCBIfam photosystem I reaction center subunit V 70 158 IPR017494 GO:0009522|GO:0009535|GO:0015979
Seca4g07817 163 PIRSF PsaK 1 163 IPR016370 -
Seca4g07817 163 Gene3D - 67 162 IPR023618 GO:0009522|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07817 Seca-Chr4 180238196 180238687 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07817 K08905 - gmx:100305786 264.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07817 4 180238196 180238687 Seca4g07817 4 180238196 180238687 ECH