Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07814 ATGGGATGTGGTATGCAGTATGGACGATTTGAAAAATTGATAGAATTAAAATTGTCATTACTTTTCCCCTTTTGTCTATGTAGGGTTCCTACTCTAGGAGGAAAGCCACTAGATCTCTATCGCCTATTCATAGAAGTAACATCTCGTGGTGGTCTTGAAAAGGTGATTGTAGATCGTAAATGGAAGGATGTGATTCTGGCCTTCAGGTTCCCTGATACCATAACAAGTGCATCATTTATGGTGCGCAGATACTATCTTTCGTTGCTTTATCACTTTGAGCAAGTGTATTTTTTTCGGAAGCATGTCCCTCCTTCCTCAACACCTGCAGATAGTCCAGCACAGACACTTGGTTCTGTAGTGCATGGAACAATTGATGGGAAATTTGATTATGGATATGTAGTTACAGTTAATCTGGGTTCTGAAGAGCTAAAAGGTGTCCTGTATCATGTTCCTGATAATGTGTCCCGGAGTACTCATGCAGAAAGCACACCTAGTACGCAGAATCGAAAGAGATCAAGATTAGCATTACGTGATCCATCTCGGCCGAAATCAAACAGGAGTGGTTACAATTTCTTTTTCGCTGAGAATTATGCCAGGCTAAAGCCCTCGTTTTATGGGCAAGAGAGAGCAATTAGTAAGAGGATTGGGTTTCTGTGGAGCAATCTGACAGAAGCAGAAAGACAGGTTTATCAGGAGAAAGGGGTGAGAGATAAGGAAAGATACAAGACTGAAATGTTGGAGTACAAATCCAATAATTCAACTCCTCAACCTCAATAG 777 0.4106 MGCGMQYGRFEKLIELKLSLLFPFCLCRVPTLGGKPLDLYRLFIEVTSRGGLEKVIVDRKWKDVILAFRFPDTITSASFMVRRYYLSLLYHFEQVYFFRKHVPPSSTPADSPAQTLGSVVHGTIDGKFDYGYVVTVNLGSEELKGVLYHVPDNVSRSTHAESTPSTQNRKRSRLALRDPSRPKSNRSGYNFFFAENYARLKPSFYGQERAISKRIGFLWSNLTEAERQVYQEKGVRDKERYKTEMLEYKSNNSTPQPQ. 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07814 258 Pfam HMG (high mobility group) box 182 249 IPR009071 -
Seca4g07814 258 ProSiteProfiles ARID domain profile. 3 97 IPR001606 GO:0003677
Seca4g07814 258 Gene3D High mobility group box domain 164 256 IPR036910 -
Seca4g07814 258 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 256 - -
Seca4g07814 258 SUPERFAMILY ARID-like 26 110 IPR036431 GO:0003677
Seca4g07814 258 Pfam ARID/BRIGHT DNA binding domain 28 93 IPR001606 GO:0003677
Seca4g07814 258 MobiDBLite consensus disorder prediction 155 170 - -
Seca4g07814 258 MobiDBLite consensus disorder prediction 155 183 - -
Seca4g07814 258 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 182 249 IPR009071 -
Seca4g07814 258 SMART hmgende2 181 250 IPR009071 -
Seca4g07814 258 SMART ARID_2 8 93 - -
Seca4g07814 258 Gene3D - 15 110 IPR036431 GO:0003677
Seca4g07814 258 SUPERFAMILY HMG-box 169 252 IPR036910 -
Seca4g07814 258 CDD HMG-box_AtHMGB9-like 182 248 - -
Seca4g07814 258 SMART bright_3 12 98 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07814 Seca-Chr4 180166645 180171394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07814 28 254 ARID Transcription Factor Family AT3G13350 55.378 3.32e-94 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca4g07814 HMG_box 6.1e-10 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07814 - - adu:107491521 356.681