Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07808 ATGGATCCAAATAAAGGAAAGAAAAAGAAGCACAAGGACAAAAAGAAAAAACATGCAACTGATCAAATGCTCAATTCAAATGAAACCCTTGAAGAAAATTGTACTGGTGAAGCAGCGGACAAACAAACTTGCTCTATTGAAGGGAATATTACATTCATAAGGAATAGGGAAGAAGAGAGACACATTGATAAGAGGAAGAAGAAAAAGGGGAGGAAAGATATTGAAGTGATGGATAGTAATGTAGGTGATGATAAAGAGGTGCAGTTATTGGAAGATAACCAACAAATCAAGATGAAGAAAAGAAAGAAGTATGATGATTCATTAACTGAAATGCGAGAAATGGGTTTTTCACAACTGAGCAAAAAAGGCAAAATGACAAAGGAGAATGAATTAATAAACAATGAAGGTGATCCTCCATTGGATAGAATCAGTGCGGGAAATTCTAATGCACACTCTCATGTCTCTAATGTTGATTGTGAAGGTGAGATGACGGAGAAGAAGAAAAAAGTGGCCAAAAGTAATGTTGATCAACATTTGGTCAAAAGCAATGAAGGTGAAGATGATGATCGAGGCAAGAAGAAGAAGAAGAAACCGAGTGTAGAAAGCAAACATAAGGAGTATAATGAGTTCAAAAGCAATGAAGGTCAAGATGATGACCAAGGCAAGAAGAAGAAGAAAAAGAAACTGAGTGAAGGAAGCAAACATAAGGAGTATAATGAGTTCAGAAGCAATGAAGGTGAAGTTAATGACCAAGGCAAGAAGATGAAGAAGCAGAAGAAACTAATTGAAGAAAGCAAACTTAATAAATATAATGAGTTTAGAAGTGATGAAGGTGAAGATGGTGACCAAGGCAAGAAGATGAAGAAGAAACTGAGTAACAAAAGCAGAAGTAAGGAGAACAGTGAGTTTGATAGGAATGAAGTCACTGAAGTTAATGATCAAGGCAAGGAGATGAAGAAAGAAAAGACACCTAAGTGTGATGGAACATCCAAACCCAAACGAGTAACTTTTTCTGATCATGTAGAGGTTTGTTGTGATGGCTTAGTGCGTGGGAAAAGGTATACACGAGAAGAAGATGAGAAGATCAAAGCAGCTGTCTCTGACTATATAGAGTCTCATGGTTTGGGAGATGAAGGTCTAGATATGGTTCTCCATTGCAAGAAACATCCTGAAGTTAGGGATTGTTGGAAGGAAATTGGAGCAGTCTTTCCTAATAGACCTTACTTAAGTGTGTATTATCGTGCTCATATTTTGTTTGAAAGGGGTGAGAGCCGTAAGTGGACACGTGATGAGCTTGAATTTGTACGGAAGGTCCAGGAACAACATGGATCTGATTGGAAATCAGTAGCTGAAGCTTTGGATAAAAGCCGAGTTCATATAAAGGATGCATGGCGTAGAATAAAATCAGCCAATCTAAATAGAGGACGATGGACCCAAGAGGAGATTCAAAAGTTATTTGATTTAGTAAACCTGGATCTACGCGCGAGGGCTTCAGAAGGTTTTAGAAAATCTAAACATGGTATGTTGCGAGATAATATTAGTTGGGAAGCAATTGGTAGCAAATTGACCACTAGAACCAGTCCAGTGTGCTGCAAAAAGTGGTATGAGAAATTAGCATCACCTATGGTTTCTAAGGGTGAGTGGTCTGACACTGATGACTACCGCTTGGTAAATGCTTTATATGCTTTGGATGCATGCTGCATGGAGGAGGTAGACTGGGACAATCTGCTTGAGCATAGGTCTGGTGATGTATGCAGAAAACGATGGAACCAAATGGTCCAACAAATTGGAGAGCATGGAGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTTCCAAGAGATATTGCCCCCACTTATTGGAAGCAAGAGAGGACTTTGATAACAAACCTGTGGTTTGTTGA 1902 0.3891 MDPNKGKKKKHKDKKKKHATDQMLNSNETLEENCTGEAADKQTCSIEGNITFIRNREEERHIDKRKKKKGRKDIEVMDSNVGDDKEVQLLEDNQQIKMKKRKKYDDSLTEMREMGFSQLSKKGKMTKENELINNEGDPPLDRISAGNSNAHSHVSNVDCEGEMTEKKKKVAKSNVDQHLVKSNEGEDDDRGKKKKKKPSVESKHKEYNEFKSNEGQDDDQGKKKKKKKLSEGSKHKEYNEFRSNEGEVNDQGKKMKKQKKLIEESKLNKYNEFRSDEGEDGDQGKKMKKKLSNKSRSKENSEFDRNEVTEVNDQGKEMKKEKTPKCDGTSKPKRVTFSDHVEVCCDGLVRGKRYTREEDEKIKAAVSDYIESHGLGDEGLDMVLHCKKHPEVRDCWKEIGAVFPNRPYLSVYYRAHILFERGESRKWTRDELEFVRKVQEQHGSDWKSVAEALDKSRVHIKDAWRRIKSANLNRGRWTQEEIQKLFDLVNLDLRARASEGFRKSKHGMLRDNISWEAIGSKLTTRTSPVCCKKWYEKLASPMVSKGEWSDTDDYRLVNALYALDACCMEEVDWDNLLEHRSGDVCRKRWNQMVQQIGEHGGKPFAEQVEILSKRYCPHLLEAREDFDNKPVVC. 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07808 633 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 425 472 IPR017930 -
Seca4g07808 633 ProSiteProfiles Myb-like domain profile. 469 538 IPR001005 -
Seca4g07808 633 MobiDBLite consensus disorder prediction 116 331 - -
Seca4g07808 633 MobiDBLite consensus disorder prediction 1 41 - -
Seca4g07808 633 SUPERFAMILY Homeodomain-like 518 595 IPR009057 -
Seca4g07808 633 ProSiteProfiles Myb-like domain profile. 540 593 IPR001005 -
Seca4g07808 633 Gene3D - 428 466 - -
Seca4g07808 633 CDD SANT 476 538 IPR001005 -
Seca4g07808 633 ProSiteProfiles Myb-like domain profile. 426 468 IPR001005 -
Seca4g07808 633 SUPERFAMILY Homeodomain-like 424 481 IPR009057 -
Seca4g07808 633 Gene3D - 467 542 - -
Seca4g07808 633 SMART sant 350 421 IPR001005 -
Seca4g07808 633 SMART sant 473 540 IPR001005 -
Seca4g07808 633 SMART sant 423 470 IPR001005 -
Seca4g07808 633 SMART sant 544 595 IPR001005 -
Seca4g07808 633 PANTHER GB|AAC33480.1 7 632 - -
Seca4g07808 633 MobiDBLite consensus disorder prediction 23 41 - -
Seca4g07808 633 Pfam Myb-like DNA-binding domain 427 485 - -
Seca4g07808 633 MobiDBLite consensus disorder prediction 57 79 - -
Seca4g07808 633 MobiDBLite consensus disorder prediction 158 331 - -
Seca4g07808 633 CDD SANT 426 468 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07808 Seca-Chr4 180023989 180026175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07808 427 559 MYB Transcription Factor Family AT3G09370 26.667 5.24e-08 53.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g07808 Myb_DNA-bind_6 1.4e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07808 - - gmx:100785842 708.368