Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07798 ATGGACAGTGAAAGAGAGGACAACCAAGGCATCAACTCCAACCACCCTGCAATTTCTAGCACACTTACAATTAAGATTGCAAGCAGCAACAAACAAGGTGAAGAGAGTTTAGGCAATTCAAATTTACCTTCACCAAACATAAAGAGCTCCATAGAATCATCACCTTATGGCTCTCCTCTTGTGTCCCCACCTTCATCAGCATTTGTTTCAGCATTGCAGTCCCCATATATATCTCCAAGGGCCACAGTCCCAAAGCCCCCAGAAGATGGTTCAACCATAGAAAACCCACCACTACTACCACCAACAACAAGCATAACCACCACCACCACCACCACCCTTCCTTCCACTCCAGAAGATGTGCCTAGTAGTTCCTACACTCCCCCTTCTGATCCATACGAGTTTTCTGATGACACTACTGATACAAAGCTCAAATTTGTGACAAGTGTTCCAGTCCCTGAAGCAGTTCCTCCACGTATCTCATTCACATTTCCAGTCCCTAGAGTTTCCTTTGCAAAAGGCCCTGTCTCCCCTGCTACCAATGCTAAACTCAGAAGCTGTGATGTCTACATTGGATTCCATGGCCAAAATCCCAACCTTGTGCGTTTCTGCAAGTGGCTTAAGTCTGAGCTTGAGCTTCAAGGGATTGATTGTTTGCTTGCTGATAGAGCAAAGTATTCAGATAGTCAAAGCCATGAGATTGCTGATAGAGTCATTTGCTCAGTGGCATTTGGATTGGTGGTTATCACAAGTTCCAGCTTCCTCAACTATCTAAGCATGGAAGAGGTGAGATTCTTTGCTCAAAAGAAGAACTTGATCCCTATTTTATTTGACACAGGACCTGCTGAGATTATGGCTCTTCTTAACTGCAACTCAATTGACAAAGAATGTAAAGAGGCAATTGATGGACTCATGAAGTGGAATGAATTCAATCTAGAGGCTAATGATGGTAATTGGAGAAGCTGCATATCAAAAGTTACTGGTATTTTGAGAGCAAGACTTGGTAGAAAGAATGCTGAGCAGAAGGATAATAATATGCAAGGATTTGAGAATTTACCTTTCCCAAGGAATACATACTTTGTTGGAAGAGAGAAGGAGATTATGGAGATTGAAGGTCTCTTTTTTGGACGTGGGAATTGTTTGGAACAAGTCCAAGATCATTGTAGGACAGTCATCAAAGGAGAAGCTAGTGGCAGTGGACAATCTGAAGGCCTTGCAGATGAGGAAAGTGAGCCAGTGATAAGCAAAGGTGGGAGGTACATCAGTCTAGAGATTGGGAGGAACAAGGAACCAACTTTAGAGGCTTGGGTTGAACCAATCGTAGGAAATAATTCATTGAAGAGGTTGAAGAATAAGAAGTCAAAGAGTGGAAACTACAAGAACTTATGTAGCAGTGTGATTTGCATTAATGGGGTTTCTGGGATTGGGAAGTCTGAGCTGGCTCTGGAATATGCTCACAGATATTACCAGAGGTACAAAATGGTCTTGTGGGTTGGTGGTGAAGCTAGGTATCTTAGGCAGAACATATTGAACTTGTCTCTCAATTTGGGTTTGGATGTTGGTGCTGATTCTGAGATGGAAAGGGGTAGAATACGTAGCTTTGAGGAGCAAGAATTTGAAGCATTCAAGAGAATCAAGAGGGAACTGTTTGGTGAGACACCTTACTTGCTGATAATTGATAATCTTGAAACTGAAGAGGAATGGTGGGAAGGGAAGGATCTATATGACTTGATACCAAGAAACACAGGAGGGACCCATGTGATTATTACTACTAGGTTGTCCAAAGTAATGAACTATGATACTATACAACTTCCACCATTGTCATTATCTGATGCAATGATTCTGATAACAGGAAGAAAAAGGAAAGAATATCCAGCAGATGAGATAGATTACCTTGAGCAATTCTATGAGAAACTTGGAAGGTTGAGCTTTGGTTTGTGGTTGATTGGTTCATTGTTGTCTGAACTTGCAGTTTCCCCCTCTACTCTCTTTGAGGCCATAAACCATGTGCAACTCAATGAAGATTCAAACTCTTGTTATATGAGTATTGCAGAAGAGCAATGGTGCAAGAGCAATCCTTTCCTCATGAAGACCCTACTGTTTTGTTTGGGAACTTTGGAGAAAGCTAAAGCAAAAGGGAATCTTCTGGCCATAAGAATGCTTCTTGTTGGTGGGTGGTTTTCCCCTGCTCCCATTACAGCTAGTTTATTAGTCAATGCAGCAAAGAGTATCCCTATCAGTGAAAATCATCTCAAGAAGTGGACCAAATGTCTGAGCCTAACATCTAGTTGTTTATCATCACAGACATGGAGAAACGAAGAGGATTCAGCAATATTTCTTGTGAAAATGGGACTGGCTCAAATGGCCAATCATCATGATGGATGTTGGCTCAAGTTCCATCCCATAACACAGGCATTTGCTAAAAGAAAAGGTGGTTTGCAATATGCCAAGGCTGCAATTCAAGGGGTAAGAAAAATGGGCAACCATGTAATCTCTGATCATTTGTGGGCATCAGCTTTTCTTGTGTTTGGGTTCAAATCTGAGCCCCCACTTGTGCAGCTGAAGGCAATTGACATGGTCTTGTACATCAAAAGAACAGCTCTCCCCCTTGCAATTCAAGCTTTCACCACTTTCTCAAGATGCAATTCAGCTTTGGAGCTTCTAAAAGTGTGCACCAATGCACTGGAGGAAGTTGAGAAGTCCTTTGTGTCTCAAATCCAAGATTGGTCCAATGACTCAATTTGTTGGAAAAGAAGGTTGCAAAGAAGCCAAAAAGTGGATGAATATGTGTGGCAGGATGTTACCTTATTGAAGGCAACACTACTGGAGACTAGAGCAAAGTTGCTAGCAAGAGGGGGGCATCTAGACGGTGGAAAGGAACTGTGCAGAACATGTATCAGTATCAGAACTGTGATGCTTGGACATAACCATGCCCAGACCTTGGCTGCTCAAGAGACATTGGCAAGGCTAGTGAGAATGAGGAGTAAGATATGA 2991 0.4229 MDSEREDNQGINSNHPAISSTLTIKIASSNKQGEESLGNSNLPSPNIKSSIESSPYGSPLVSPPSSAFVSALQSPYISPRATVPKPPEDGSTIENPPLLPPTTSITTTTTTTLPSTPEDVPSSSYTPPSDPYEFSDDTTDTKLKFVTSVPVPEAVPPRISFTFPVPRVSFAKGPVSPATNAKLRSCDVYIGFHGQNPNLVRFCKWLKSELELQGIDCLLADRAKYSDSQSHEIADRVICSVAFGLVVITSSSFLNYLSMEEVRFFAQKKNLIPILFDTGPAEIMALLNCNSIDKECKEAIDGLMKWNEFNLEANDGNWRSCISKVTGILRARLGRKNAEQKDNNMQGFENLPFPRNTYFVGREKEIMEIEGLFFGRGNCLEQVQDHCRTVIKGEASGSGQSEGLADEESEPVISKGGRYISLEIGRNKEPTLEAWVEPIVGNNSLKRLKNKKSKSGNYKNLCSSVICINGVSGIGKSELALEYAHRYYQRYKMVLWVGGEARYLRQNILNLSLNLGLDVGADSEMERGRIRSFEEQEFEAFKRIKRELFGETPYLLIIDNLETEEEWWEGKDLYDLIPRNTGGTHVIITTRLSKVMNYDTIQLPPLSLSDAMILITGRKRKEYPADEIDYLEQFYEKLGRLSFGLWLIGSLLSELAVSPSTLFEAINHVQLNEDSNSCYMSIAEEQWCKSNPFLMKTLLFCLGTLEKAKAKGNLLAIRMLLVGGWFSPAPITASLLVNAAKSIPISENHLKKWTKCLSLTSSCLSSQTWRNEEDSAIFLVKMGLAQMANHHDGCWLKFHPITQAFAKRKGGLQYAKAAIQGVRKMGNHVISDHLWASAFLVFGFKSEPPLVQLKAIDMVLYIKRTALPLAIQAFTTFSRCNSALELLKVCTNALEEVEKSFVSQIQDWSNDSICWKRRLQRSQKVDEYVWQDVTLLKATLLETRAKLLARGGHLDGGKELCRTCISIRTVMLGHNHAQTLAAQETLARLVRMRSKI. 997
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07798 996 PANTHER DNA REPAIR PROTEIN RADA 50 991 - -
Seca4g07798 996 MobiDBLite consensus disorder prediction 96 133 - -
Seca4g07798 996 Gene3D - 171 303 IPR035897 -
Seca4g07798 996 MobiDBLite consensus disorder prediction 79 133 - -
Seca4g07798 996 ProSiteProfiles TIR domain profile. 184 333 IPR000157 GO:0007165
Seca4g07798 996 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 442 601 - -
Seca4g07798 996 Gene3D - 437 602 IPR027417 -
Seca4g07798 996 MobiDBLite consensus disorder prediction 1 65 - -
Seca4g07798 996 Pfam NB-ARC domain 446 598 IPR002182 GO:0043531
Seca4g07798 996 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 167 305 - -
Seca4g07798 996 MobiDBLite consensus disorder prediction 10 65 - -
Seca4g07798 996 SMART AAA_5 462 620 IPR003593 GO:0016887
Seca4g07798 996 SUPERFAMILY Toll/Interleukin receptor TIR domain 185 284 IPR035897 -
Seca4g07798 996 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 352 673 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07798 Seca-Chr4 179621524 179625625 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07798 - - gmx:100781208 1661.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07798 4 179621524 179625625 Seca4g07798 4 179621524 179625625 ECH