Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07795 ATGCCGGAAAGCGATCAGCATCGTCTTCTGGTGTCGGCGGAAGGTGAAGATCGTGACGTGGAAGCTGAGGGTTCTGAATTGGTTGTCGTCAATGGCAATGGTGGTGGCAGTGGCAGTGGCAAAGGGTTCAGGGATTTGTTGAGGTTATCGGGTCATCACCACCGCCACAGTTTCAAGCGTCTTGAGAAAGATGGAGATAGGGATAGAGATAGAGATAGGGATAGAAATAGAGATCACAACGATCACAATGATTCTTCGCACCCGGGTTTTGATATTCATTCTGATGATTCTTCTGGTGATGTCCTTGGCGATAGTGCACCTCCTGAATGGGTCTTGCTCCTCATCGGTTGCCTCCTTGGCCTCGTCACTGGCCTCTTTGTCGCTGTTTTCAATAAAGGGGTGCATGTAATCCATGAATGGGTGTGGGCTGGCACTCCAAATGAAGGTGCTTCTTGGCTTCGTTTGCAGAGACTGGCTGATACATGGCACCGAATCCTTTTGATACCTGTCACTGGAGGAGTCATTGTTGGCATGATGTGTGGTTTACTGGAAATACTGGACCAAATAAAGCAGTCCACTCATTCCTCTCAAAGACAAGGTTTTGATTTGCTTGCAGGAATCTTTCCAACAATAAAGGCTATTCAAGCTGCAGTTACTTTAGGTACTGGCTGTTCATTGGGTCCTGAAGGTCCTAGTGTGGATATTGGAAAGTCATGTGCCAATGGGTTCTCACTAATGATGGAAAACAACAGAGAAAGAAAAATAGCACTTGTTGCAGCTGGTGCAGCAGCTGGAATTTCTTCAGGCTTCAATGCAGCAGTTGCTGGTTGTTTCTTTTCTATTGAAACTGTGCTGAGACCTCTTCGTGCAGAGAACTCTCCTCCATTTACAACTGCCATGATTATATTGGCTTCTGTTATCTCGTCAACCGTAACAAATGTTTTACAGGGAACCCAATCAGCTTTTACAGTGCCTGAGTATCAGTTGAAATCTGCTGCTGAACTACCTTTATACCTGATACTGGGAATGCTATGTGGTGTTGTAAGTGTGGCCATGACTCGTTTGGCTACTTGGTTTACCAAATTATTTGAGGTTATCCAGGAGAAATTTGGCCTTCCTACTGTAGTCTGCCCTGCTATAGGTGGTTTAGGAGCTGGGATCATTGCTCTTAAATATCCTGGAATATTGTATTGGGGTTTCACAAATGTAGAAGAAATTCTACGAACTGGAAAGAGTGCTTCAGCTCCTGGAATATGGCTTCTGACTCAATTGGCAGGCGCTAAGGTTATTGCCACAGCTCTTTGCAAGGGATCTGGTCTAGTTGGTGGTCTTTATGCACCAAGTTTAATGATTGGTGCTGCCGTTGGTGCTGTATTTGGAGGCTTTGCTGCAGAAGTTATCAACTCAGCAATTCCTGGAAATGCTGCTGTTGCCCAACCCCAGGCTTATGCTCTGGTTGGAATGGCTGCTACATTGGCATCTGTTTGTTCTGTTCCTTTGACTTCAGTTCTACTTCTGTTTGAGCTGACAAAAGATTATAGGATACTGCTTCCTCTAATGGGGGCTGTTGGATTGGCAATATGGGTTCCGTCAGTTGCAAACCAAGCAAAAGAGAGTGATACACCGGATACAAGAAACTCAGCAAAAGGATATTCTTCAATTTCACATGCTGAAGATGATGGGAATGGTTTAGAACTCTCTGTTGTAGGAGATGCGGTTGATCTTGAAGACATTGACGAGGAATTTCTTTTGGACAATCTTAAGGTTGAGAATAACTTTTTCATATTTCCTTGA 1794 0.4454 MPESDQHRLLVSAEGEDRDVEAEGSELVVVNGNGGGSGSGKGFRDLLRLSGHHHRHSFKRLEKDGDRDRDRDRDRNRDHNDHNDSSHPGFDIHSDDSSGDVLGDSAPPEWVLLLIGCLLGLVTGLFVAVFNKGVHVIHEWVWAGTPNEGASWLRLQRLADTWHRILLIPVTGGVIVGMMCGLLEILDQIKQSTHSSQRQGFDLLAGIFPTIKAIQAAVTLGTGCSLGPEGPSVDIGKSCANGFSLMMENNRERKIALVAAGAAAGISSGFNAAVAGCFFSIETVLRPLRAENSPPFTTAMIILASVISSTVTNVLQGTQSAFTVPEYQLKSAAELPLYLILGMLCGVVSVAMTRLATWFTKLFEVIQEKFGLPTVVCPAIGGLGAGIIALKYPGILYWGFTNVEEILRTGKSASAPGIWLLTQLAGAKVIATALCKGSGLVGGLYAPSLMIGAAVGAVFGGFAAEVINSAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVANQAKESDTPDTRNSAKGYSSISHAEDDGNGLELSVVGDAVDLEDIDEEFLLDNLKVENNFFIFP. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07795 597 CDD Voltage_gated_ClC 122 526 - -
Seca4g07795 597 MobiDBLite consensus disorder prediction 1 101 - -
Seca4g07795 597 Gene3D Clc chloride channel 101 544 - -
Seca4g07795 597 Pfam Voltage gated chloride channel 186 529 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 SUPERFAMILY Clc chloride channel 108 532 IPR014743 -
Seca4g07795 597 PRINTS Chloride channel signature 263 282 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 PRINTS Chloride channel signature 212 231 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 PRINTS Chloride channel signature 499 518 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 PRINTS Chloride channel signature 440 460 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 PRINTS Chloride channel signature 481 497 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Seca4g07795 597 MobiDBLite consensus disorder prediction 59 98 - -
Seca4g07795 597 MobiDBLite consensus disorder prediction 537 556 - -
Seca4g07795 597 FunFam Chloride channel protein 100 545 - -
Seca4g07795 597 MobiDBLite consensus disorder prediction 537 553 - -
Seca4g07795 597 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 26 591 - -
Seca4g07795 597 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07795 Seca-Chr4 179422280 179440297 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07795 K03281 - gmx:100796023 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07795 4 179422280 179440297 Seca4g07795 4 179422280 179440297 ECH