Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07788 ATGGCCGAATTACTCAATGAGTGTATTATGCTGAAGGACATTGGGCCCAATATTCTGAAACCTGTTACCAGAGCACGTGTTAATCGTCTGTGGAGTGTCCCAAACATGAAGATTCCGCTTGAGATCAACTCTGTTGAGATTGTGTTGGTTGATTCACAGGGGTGTAAAATACAAGCAACAATACTAAGGGAGTTGGTGAACATCTTTCAAAGCAACATAGTTGAGGAGGGGAGTTACATTTTCTTTGATTTCGTGGTTAACTACTGTGTGAGTCCGATGACAAACTGGGAGATAAGGAACTTTAAGGCTCACCTGGATTACTTAGTGGATGTTATTGGAGTTGTGACAGCCATCTCACCTGAGAAGGATTTTGGGTATGGCATTGGGGCTAAGAAATATGTTTCCTTGGAGGTGATAGATTACACTGGAAAGGTTGAGTGCATGTTGTTTGATGAGTATATCACCTTGGTGAAGGATTATCTAAAGTTTTGCGGAAGGCCCAGGCCAATCATTGTTATCCAGTATGCAAGGGTCATCCCTCTACCTGGGCCAGTGTTTGGTGAAATCGTGGTACAAAACTATTACAATGCGACTAGGGTAATGTTTAATGGGGCTATTCCTGAGGTCATGGAGTTTAAGAAGAGGATTGCTGCACTGGGGATGGCGTACGAGGATAAGTCAACAGCATTTAGCCAGGGGACAGTTGAAATACCAATGAAGGATGATTTCCTTGTCCTCAATTCAAGGAAAAGAATTGGTGAACTGCAAGTGTGTAAAGAGGCCGGAGTGTTTGTAATATTGGCTAGAGTAGTTGGATTTATGGAGACTGGCCGGTGGTGGTACTATGCATGCAAGTGTAACCGGCCTGCTTTCCCCAAGAATGATGTCTTTTACTGTCCAGGGTGTTGCAAGTTGGTTGCAAATGTTATTCCTAGATATATGATAAAGGTCAAGGTATATGATGGGGATAAACATGCTTGCTTCAGATGTTTTGATGTTGATATCCACAGATTGCTGAAAAAATCCTGCAAGGACTTGCTAAATGATGTCCAGGACCCTACTTCCAGTAAACTTCCAAGTGTGTTTACTACTTTGGTTGGGCGAAACCTCTTATTCAAAGTGGAAAATACATGGCACTCTATGCGAGGATTTGACGATGTGCGTAAGATTTTGCGTGTGTGTGATGATAGGGAAATAATCGAGCTTTTTTCGCACGAGACAATGGGAATGAATTTCCAGGCTGAACCTATGCGCGGAATTGAGTTCTTCCCATTGCCTGCCCGAGGCAACTTGGGCAAAGGGATCAACATTGGCAGTGACAACTTGGATTTGATACTGGGGTTGCCTGCCAAGCGGAAGAACTATGGGGAAGGGCCACTTCGTTACGATGGGGACGCGAGATGTGAGGTGATAAAGCCAGGTGGTGAGGGATGCTCAAAGACAATGGAAGAAATTGTATCATTCAAGAAAGAACCTGTGGAAGATGGTGAGCATGTTGGTGACCCTACAGTGTTGAAGTTGTCTGCTGTCTAA 1533 0.439 MAELLNECIMLKDIGPNILKPVTRARVNRLWSVPNMKIPLEINSVEIVLVDSQGCKIQATILRELVNIFQSNIVEEGSYIFFDFVVNYCVSPMTNWEIRNFKAHLDYLVDVIGVVTAISPEKDFGYGIGAKKYVSLEVIDYTGKVECMLFDEYITLVKDYLKFCGRPRPIIVIQYARVIPLPGPVFGEIVVQNYYNATRVMFNGAIPEVMEFKKRIAALGMAYEDKSTAFSQGTVEIPMKDDFLVLNSRKRIGELQVCKEAGVFVILARVVGFMETGRWWYYACKCNRPAFPKNDVFYCPGCCKLVANVIPRYMIKVKVYDGDKHACFRCFDVDIHRLLKKSCKDLLNDVQDPTSSKLPSVFTTLVGRNLLFKVENTWHSMRGFDDVRKILRVCDDREIIELFSHETMGMNFQAEPMRGIEFFPLPARGNLGKGINIGSDNLDLILGLPAKRKNYGEGPLRYDGDARCEVIKPGGEGCSKTMEEIVSFKKEPVEDGEHVGDPTVLKLSAV. 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07788 510 CDD RPA1_DBD_B_like 110 215 - -
Seca4g07788 510 Gene3D - 6 96 IPR012340 -
Seca4g07788 510 Gene3D - 245 395 IPR012340 -
Seca4g07788 510 SUPERFAMILY Nucleic acid-binding proteins 259 387 IPR012340 -
Seca4g07788 510 SUPERFAMILY Nucleic acid-binding proteins 11 89 IPR012340 -
Seca4g07788 510 SUPERFAMILY Nucleic acid-binding proteins 104 220 IPR012340 -
Seca4g07788 510 Gene3D - 97 224 IPR012340 -
Seca4g07788 510 Pfam Replication factor-A C terminal domain 269 380 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07788 Seca-Chr4 179329214 179332048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07788 108 351 Core DNA Replication Machinery Family AT5G08020 24.809 2.54e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07788 - - lja:Lj1g3v3385890.1 233.417