Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07783 ATGGCTGGGATTGATGATAATGTTGCTCTTACTGGTGATTGGGGTCTTGCTAGCCCTAGTCCAAGGACCCTTTTTTCTAGAATGCTAGATGAAGATAATTTAACAAGATCAATCTCAGAACAACCTGGAAGTGGTAGAACTGAGGATCTCTTTCTGGGAACTCATGGGCCCTGTGAGACAGGGAAAGGAAACATAAAAGATAGGACACAAGATGGTGATTCTGGTGCCCAATTGACTGACATGAGTTTTCGAATGGAGCAGAAGTCGAGCTCACGGGGTGGTCTTGTTGAAAGAATGGCAGCTAGAGCTGGGTTTAATGCTCCAAGGTTGAATACAGAAGGCATTAGATCTACTGACCTTTCACTTAATTCTGACATTCAGTCTCCTTACTTGACTATACCGCCTGGTCTCAGTCCTACTACACTTTTAGATTCTCCAGTGTTCCTTGCAAATTCACTGGCACAGCCATCCCCAACAACAGGGAAGTTTCCATTTGTCTCAAATGGCAACATCCGGTGCTCAGAATTATCATCTGATGCTCCAGAAAAATGTAAAGATAGTGGCTTTGATGATATCTATGCATCATCCTTTGCTTTCAAGCCTACAGCAGATCCAGCCTCTTCTTTTTATCATGGTGCTGGAACAAAAATAAATCCAGCTACACTTCATCAACAATCCCTACCAGCTTCAGTTCAGTCACAAAATTCTTTTCAATCTCAAAGTGTCAATGCAGTCAAAGCTCAAACTGAGAATAAAAGTGGCATCCATCTTCAAGCAGACTTCATCGAATCGCAACCTCAAAAAGATAATGGAATTAAAATGTTCTCAACTGATCAAAGGGCTTTTGATGCTGTTGGCGGTAACATTGAACATTCTACACCAACTGAAGAGCAAGCAGATGAAGAGGGAGATCAAAGAGGCAATGGAGACTCAATGGCTGCTGGTGCTGGTGGTGCACCATCTGAAGATGGATATAACTGGAGAAAATATGGCCAAAAGCAAGTTAAGGGTAGTGAGTATCCACGAAGTTACTACAAGTGTACACACCCAAATTGTCAGGTTAAGAAGAAAGTAGAACGTTCTCATGAGGGCCACATAACAGAGATCATCTATAAGGGAGCACACAACCATCCGAAACCTCCTCCAAATCGCCGGTCAGGCATAGGGTCAGTTAACCCTCATACTGACATGCAAGTGGACAATCCTGAACATGTTGAACCACAAAATGGTGGTGACAGTGACCTGGGCTGGGCTAATGTACAAAAGGGAAATATAGCTGGTACTGCTAGCTGGAAGCATGACAACCTTGAAGTGACATCATCAGCATCTGTCGGCCCTGAGTACTGCAACCAGTCCACCAATTTGCAGACACAAAATAGTACTCACTTTGATTCAGGAGATGCAGTGGATGCCTCATCTACTTTTTCTAATGAAGAAGATGAAGATGATCAAGGAACTCATGGTAGTGTATCCTTAGGTTATGATGGGGAAGGAGATGAATCAGAGTCTAAAAGAAGGAAACTGGAATCATATGCAACAGAGTTGAGTGGAGCTACAAGAGCTATTCGTGAGCCTAGAGTTGTTGTACAGACTACCAGTGAAGTAGATATCCTGGATGATGGTTATCGGTGGCGGAAATATGGACAAAAAGTTGTCAAAGGAAATCCCAACCCAAGGAGTTACTACAAGTGCACCAATGCAGGGTGCACAGTAAGGAAGCATGTTGAGAGAGCATCACATGACCTTAAATCTGTGATCACTACATATGAGGGAAAGCACAACCATGATGTTCCCGCTGCTCGTGCTAGCAGTCATGTGAATGCAAACGCTTCAAACACTGTTCCTGGGCAAGCTTCTGGTGTTCTTCAAACCCATGTTCATAGACCTGAACCATCTCAAGTTCACAATGGCATTGGAAGGCTTGAGAGGCCATCCCTTGGCTCATTCAGCCTTCCTGGGAGGCAGCAGTTAGGTCCTTCCCATGGCTTCTCCTTTGGTATGAATCAACCAATGCTCTCAAACCTGGCAATGTCGGGATTGGGCCCCGCGCAAGCAAAGCTTCCTGTCATGCCTGTTCATCCATTCTTGGCACAACAACGCCCTGCAAATGAAATGGGATTCATGTTGCCAAAGGGAGAACCAAATGTGGAGCCTATTCCTGAACGTGGCCTCAACCTGCCTAGTGGCTCGTCAGTATATCAAGATATTATGAGTCGCATGCCTCTTGGACCTCATATGTAA 2241 0.4453 MAGIDDNVALTGDWGLASPSPRTLFSRMLDEDNLTRSISEQPGSGRTEDLFLGTHGPCETGKGNIKDRTQDGDSGAQLTDMSFRMEQKSSSRGGLVERMAARAGFNAPRLNTEGIRSTDLSLNSDIQSPYLTIPPGLSPTTLLDSPVFLANSLAQPSPTTGKFPFVSNGNIRCSELSSDAPEKCKDSGFDDIYASSFAFKPTADPASSFYHGAGTKINPATLHQQSLPASVQSQNSFQSQSVNAVKAQTENKSGIHLQADFIESQPQKDNGIKMFSTDQRAFDAVGGNIEHSTPTEEQADEEGDQRGNGDSMAAGAGGAPSEDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHPKPPPNRRSGIGSVNPHTDMQVDNPEHVEPQNGGDSDLGWANVQKGNIAGTASWKHDNLEVTSSASVGPEYCNQSTNLQTQNSTHFDSGDAVDASSTFSNEEDEDDQGTHGSVSLGYDGEGDESESKRRKLESYATELSGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARASSHVNANASNTVPGQASGVLQTHVHRPEPSQVHNGIGRLERPSLGSFSLPGRQQLGPSHGFSFGMNQPMLSNLAMSGLGPAQAKLPVMPVHPFLAQQRPANEMGFMLPKGEPNVEPIPERGLNLPSGSSVYQDIMSRMPLGPHM. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07783 746 ProSiteProfiles WRKY domain profile. 533 598 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 FunFam WRKY transcription factor 311 381 - -
Seca4g07783 746 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 143 613 IPR044810 GO:0003700
Seca4g07783 746 MobiDBLite consensus disorder prediction 288 328 - -
Seca4g07783 746 MobiDBLite consensus disorder prediction 449 473 - -
Seca4g07783 746 SUPERFAMILY WRKY DNA-binding domain 530 598 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 MobiDBLite consensus disorder prediction 370 419 - -
Seca4g07783 746 ProSiteProfiles WRKY domain profile. 316 380 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 Gene3D WRKY domain 525 591 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 SMART WRKY_cls 321 379 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 SMART WRKY_cls 538 597 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 MobiDBLite consensus disorder prediction 35 76 - -
Seca4g07783 746 Gene3D WRKY domain 312 381 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 Pfam WRKY DNA -binding domain 539 595 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 Pfam WRKY DNA -binding domain 322 378 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 MobiDBLite consensus disorder prediction 497 511 - -
Seca4g07783 746 SUPERFAMILY WRKY DNA-binding domain 320 380 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca4g07783 746 FunFam WRKY transcription factor 33 525 591 - -
Seca4g07783 746 MobiDBLite consensus disorder prediction 449 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07783 Seca-Chr4 179281723 179286583 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07783 1 741 WRKY Transcription Factor Family AT5G56270 51.828 0.0 590
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca4g07783 WRKY 3.8e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07783 K18835 - gmx:100796545 1293.87