Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07782 ATGTCATGGTCAGGAGGAGGAGGAAGAGCACCAACAAGTGTAGTGGGGTTCCTTGTTGTGATTGCCTCATTGATGATACTAACAACATTAACATTCTCAACAACAACCTCTGCTTCTGCTTCTGCTTCTAACGAAGAAGAACAAGAAGAAGATGTTTCAGTAACGTTGTTGAGAAGGTTCAAGCACTCTTATGTTTCCTCTGATCCAAACAAGTTCCTCTCTGACTGGTCCAACCCCACTTCTTCTCATCCCTGCTCTTGGCGCGCCGTTTCTTGCTCCGACGCCGGTCACATCACCACCGTGAACCTCACCGGAGCTTCTCTCTCCGGCACCCTTCACCTTCCAACTCTCACTTCAATACCCTCTTTGCAACACCTTCTCTTACGTGGCAATTCCTTCACATCTTTCAACTTTTCCGTTTCCTCTTCTTGCTCTCTTGTGACTCTTGACCTTTCAGCTAACAACTTTTCCGGTGAGTTTCCCTTCCATGACCTTGTTCCTTGCCATAGCCTCAGATATCTCAACTTGTCTCGGAATTTGATCACTGAAGCAGCTTCTCAATCTCACGCTTTTGGGTTTGGTTCTTCTCTGGTTGAACTTGACTTGTCGAGAAATCGGTTTTCTGACATTGACTTTTTGGTATCTGCTATTGGTAAAAACTGTCAGGGTTTGGTTCTGCTTAATTTCTCTGATAACCGAATCGCGGGTCAACTCAGCGAGTCTCTTGTTCCTTGCGCCAACCTCTCTACTTTGGACTTGTCTCATAATCTGCTTTCTGGGGAGATACCCCCTCGTCTTGTGGGGTATGATTTGGAGGCTTTGGATCTCTCAAGCAACAATTTTTCTGGTGGGTTTTCTGGGTTTGATTTTGGGAACTGCAGGAGTCTTGTTTTGTTGAGTTTCTCTCACAATGCGCTTCTGGGTGGTGAGTTTCCACCAAGCTTGAGGAATTGTCAGGTGCTGGAGACTCTAGATCTTTCCCACAATGAGCTCAGGTTGAAGATTCCTGGGGCTCTTCTTGGAGGGTTAGGGAGTTTGAAGGAATTGTTTTTAGGGCATAATCATTTTTATGGAGAAATACCTGGGGAACTTGGAATGGCTTGTGGGTCTTTGGAGGTGCTTGATCTATCTGAGAATAAGCTTTCTGGTGAGTTGCCTTTGACCTTTGGAAAGTGCTCTTCTTTGAAGAGTCTTAACCTTGCTAAGAATTATCTCTCTGGAAACTTCCTTACCTCGGTTGTTAGCAAACTTTCCAGTCTTAGATATCTCTATGTGCCATTCAATAACATAACAGGACCTGTTCCCTTGTCTCTTGCTAATTGTACACAGCTTCAGGTTCTTGACCTCAGTTCCAATGCCTTCACTGGCAATGTCCCTCCCTGGTTTTGTTCTTCTCTCCCTGCCTTGGAGAAGTTACTTCTGGCTGACAATAACCTCTCAGGGATGGTGCCTGCAGAGCTTGGTGGGTGCAAGAATTTGAGGACAATTGATTTCAGCTTTAATAATTTGAATGGCTCAATACCCTTGAAGGTTTGGTCCTTGCCTAATCTTTCTGACTTGATTATGTGGGCAAACAACCTCTCAGGGGAGATTCCTGAAGGAATATGTGTCAATGGAGGGAACCTTGAGACCTTGATTCTTAATAACAATTTCATCTCAGGCTCCATTCCTCAGTCAATTGCCAATTGTACCAACATGATTTGGGTGTCCTTGGCCAGCAACCGCATTACTGGGGGAATACCTGCTGGTATTGGGAATCTGTATGCTCTTGCTATACTCCAATTGGGTAACAATTCACTAACTGGACAGATCCCTCCAGAGATTGGGAAGTGTAGGAGGCTCATTTGGTTAGATTTGACTAGCAATAACTTGACTGGTACTATTCCATCTGAGCTTGCCAATCAAGCAGGATTGGTTATTCCAGGGAGTGTTTCAGGGAAGCAGTTTGCATTTGTGAGAAATGAAGGTGGGACAAGTTGCAGGGGAGCTGGAGGGTTAGTTGAATTTGAGGATATAAGGACAGAGAGGCTTGAAGGTTTTCCTATGGTCCATTCCTGTCCATTAACAAGAATATACTCTGGTTGGACTGTTTATACCTTCACTTCCAATGGCAGCATGATCTACCTTGATCTTTCCTACAATTCCTTGTCAGGGAGTATTCCTGAAAACTTTGGTGCAATGACCTATTTGCAGGTCTTAAATCTGGGACACAATAGGCTCACTGGAAGTATTCCAGACAGCTTTGGTGGTCTAAAAGCAATAGGAGTGCTTGATCTCTCCCACAATAACCTTCAAGGTTTCATCCCTGGGTCATTGGAATCTCTATCTTTTCTCAGTGACCTTGATGTGTCTAATAATAACCTTACAGGCACCATTCCTTCTGGTGGTCAGCTAACCACTTTCCCTGCATCTAGATATGAAAATAACTCCAACCTTTGTGGCGTCCCGTTACCACCATGTGGCTCTTCAAATCACTCAGCAGCTTTTCATACTTGGAAGAAGAAACAACCTATTGCAACAATGATTGTAATTGGCCTCCTTTCCTTCCTCTTGGTCATTGTTGGGCTTGTATTAGCTTTATATAAGGTGGAAATGACCCGGAAGAAGGAGGAAAGAAGAGAAAAATATATAGAAAGTCTTCCAACTTCAGGCAGCAGCAGTTGGAAACTTTCCAGCTATCCTGAGCCTCTAAGCATCAATGTTGCCACCTTTGAGAAACCTCTGCGTAAGTTGACATTTGCCCATCTTCTTGAGGCTACTAATGGTTTCAGTGCTGAAAGCTTGATAGGGTCTGGAGGGTTTGGTGAAGTCTACAAAGCTAAGCTGAAAGATGGGTGTGTTGTTGCTATCAAGAAGCTCATTCATGTCACAGGTCAGGGAGATAGAGAGTTCATGGCTGAAATGGAAACTATTGGGAAGATTAAGCATAGGAACTTGGTTCCACTGCTGGGTTACTGTAAAGTTGGAGAGGAGAGGCTTCTTGTGTATGAATACATGAAATGGGGAAGTCTGGAGGCTGTTCTACATGACAGGGCTAAAGGAGGAGGTTCAAATCTTGACTGGGAAGCAAGAAAGAAGATTGCCATAGGGTCAGCAAGAGGTCTTGCATTTCTTCACCATAGTTGCATACCTCACATTATACACAGGGACATGAAGTCCAGCAATATTCTTCTTGATGAAAATTTTGAGGCCAGAGTTTCAGATTTTGGCATGGCAAGATTGGTTAATGCCCTTGACACTCATCTCACAGTCAGCACACTTGCTGGAACACCAGGTTATGTACCCCCTGAATACTACCAAAGCTTTAGATGCACAGCAAAAGGGGATGTCTATAGTTATGGTGTCATACTGCTAGAGCTTCTATCAGGGAAGAGGCCAATTGACTCAGCTGAGTTTGGTGATGACAGCAACCTTGTTGGATGGTCTAAGAAGCTTCATAGAGAGAAAAGAATTAATGAAATACTTGATCCTGATTTAATCATGCACTCATCTAGTGAAAGTGAACTATATCAATATTTGAGAATTGCTTTTGAATGTCTAGATGAAAGACCATACCGGCGGCCAACCATGATACAAGTGATGGCAATGTTTAAAGAGCTTCAGGTGGACACAGATAGTGATATCCTTGATGGCTTCTCTCTGAGAGACAATGTTATTGATGAAGCATGA 3669 0.4374 MSWSGGGGRAPTSVVGFLVVIASLMILTTLTFSTTTSASASASNEEEQEEDVSVTLLRRFKHSYVSSDPNKFLSDWSNPTSSHPCSWRAVSCSDAGHITTVNLTGASLSGTLHLPTLTSIPSLQHLLLRGNSFTSFNFSVSSSCSLVTLDLSANNFSGEFPFHDLVPCHSLRYLNLSRNLITEAASQSHAFGFGSSLVELDLSRNRFSDIDFLVSAIGKNCQGLVLLNFSDNRIAGQLSESLVPCANLSTLDLSHNLLSGEIPPRLVGYDLEALDLSSNNFSGGFSGFDFGNCRSLVLLSFSHNALLGGEFPPSLRNCQVLETLDLSHNELRLKIPGALLGGLGSLKELFLGHNHFYGEIPGELGMACGSLEVLDLSENKLSGELPLTFGKCSSLKSLNLAKNYLSGNFLTSVVSKLSSLRYLYVPFNNITGPVPLSLANCTQLQVLDLSSNAFTGNVPPWFCSSLPALEKLLLADNNLSGMVPAELGGCKNLRTIDFSFNNLNGSIPLKVWSLPNLSDLIMWANNLSGEIPEGICVNGGNLETLILNNNFISGSIPQSIANCTNMIWVSLASNRITGGIPAGIGNLYALAILQLGNNSLTGQIPPEIGKCRRLIWLDLTSNNLTGTIPSELANQAGLVIPGSVSGKQFAFVRNEGGTSCRGAGGLVEFEDIRTERLEGFPMVHSCPLTRIYSGWTVYTFTSNGSMIYLDLSYNSLSGSIPENFGAMTYLQVLNLGHNRLTGSIPDSFGGLKAIGVLDLSHNNLQGFIPGSLESLSFLSDLDVSNNNLTGTIPSGGQLTTFPASRYENNSNLCGVPLPPCGSSNHSAAFHTWKKKQPIATMIVIGLLSFLLVIVGLVLALYKVEMTRKKEERREKYIESLPTSGSSSWKLSSYPEPLSINVATFEKPLRKLTFAHLLEATNGFSAESLIGSGGFGEVYKAKLKDGCVVAIKKLIHVTGQGDREFMAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKWGSLEAVLHDRAKGGGSNLDWEARKKIAIGSARGLAFLHHSCIPHIIHRDMKSSNILLDENFEARVSDFGMARLVNALDTHLTVSTLAGTPGYVPPEYYQSFRCTAKGDVYSYGVILLELLSGKRPIDSAEFGDDSNLVGWSKKLHREKRINEILDPDLIMHSSSESELYQYLRIAFECLDERPYRRPTMIQVMAMFKELQVDTDSDILDGFSLRDNVIDEA. 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07782 1222 ProSitePatterns Protein kinases ATP-binding region signature. 929 952 IPR017441 GO:0005524
Seca4g07782 1222 Gene3D Phosphorylase Kinase; domain 1 886 998 - -
Seca4g07782 1222 ProSiteProfiles Protein kinase domain profile. 923 1200 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07782 1222 Gene3D Ribonuclease Inhibitor 45 158 IPR032675 -
Seca4g07782 1222 FunFam Brassinosteroid LRR receptor kinase 999 1202 - -
Seca4g07782 1222 SMART LRR_typ_2 587 611 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 751 774 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 120 143 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 514 538 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 168 193 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 245 269 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 466 489 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 727 750 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 368 391 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 343 367 IPR003591 -
Seca4g07782 1222 SMART LRR_typ_2 775 798 IPR003591 -
Seca4g07782 1222 Pfam Brassinosteroid receptor island domain 637 701 IPR045381 -
Seca4g07782 1222 SUPERFAMILY RNI-like 101 431 - -
Seca4g07782 1222 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 215 463 - -
Seca4g07782 1222 Gene3D Ribonuclease Inhibitor 187 821 IPR032675 -
Seca4g07782 1222 SUPERFAMILY Protein kinase-like (PK-like) 904 1197 IPR011009 -
Seca4g07782 1222 FunFam serine/threonine-protein kinase BRI1-like 2 884 998 - -
Seca4g07782 1222 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 699 819 - -
Seca4g07782 1222 Pfam Leucine rich repeat N-terminal domain 56 93 IPR013210 -
Seca4g07782 1222 ProSiteProfiles Leucine-rich repeat profile. 196 217 IPR001611 GO:0005515
Seca4g07782 1222 Gene3D - 644 701 - -
Seca4g07782 1222 SMART serkin_6 923 1197 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07782 1222 Pfam Leucine rich repeat 443 503 IPR001611 GO:0005515
Seca4g07782 1222 Pfam Leucine rich repeat 370 430 IPR001611 GO:0005515
Seca4g07782 1222 Pfam Leucine rich repeat 729 788 IPR001611 GO:0005515
Seca4g07782 1222 Gene3D Transferase(Phosphotransferase) domain 1 999 1212 - -
Seca4g07782 1222 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 413 1198 - -
Seca4g07782 1222 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 464 537 - -
Seca4g07782 1222 Pfam Protein kinase domain 925 1195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07782 1222 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 538 628 - -
Seca4g07782 1222 Pfam Leucine Rich Repeat 541 563 IPR001611 GO:0005515
Seca4g07782 1222 SUPERFAMILY L domain-like 461 820 - -
Seca4g07782 1222 FunFam Serine/threonine-protein kinase BRI1-like 1 644 701 - -
Seca4g07782 1222 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1046 1058 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07782 Seca-Chr4 179220438 179224106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07782 25 1221 Receptor kinase-like Gene Family AT1G55610 62.003 0.0 1461
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca4g07782 Pkinase 3.6e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07782 - - gmx:102670093 1757.65