Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07781 ATGGCTTCCTCGTCGAGCAGCGGATTAACATTCAAGCTGCACCCTCTGGTGATCGTTAACATTTCAGACCATTACACGAGGGTGAAGTCTCAGATGAACCCAACCCTGGCGCCCCACAACAACGCCCCCAATGGCGGTGACGGCGTCGTTTCTTCCCTTCCCCCGCGGGTCTATGGCTGTGTCATAGGGGTGCAGAAGGGTCGCACCGTCGAGATCTTCAACAGTTTCGAGCTCCTCTATGATCCCTCTACCCATTCCCTCGATCGCCCCTTCCTCGAGAAGAAGCAAGAGCTCTATAAGAAGGTTTTCCCACACTTCTACATACTGGGATGGTATTCAACTGGGAGTGATGCACAGGAATCAGATATGCATATTCACAAAGCTTTGATGGATATCAATGAAAGTCCAGTTTATGTTCTTCTCAATCCTTCAATTAATCATTCTCAGAAGGATCTCCCTGTCAGTATTTTTGAAAGTGAACTGCATGTCATAGATGGGAATCCACAACTTATCTTTGTTCGCTCAAGCTATACTATTGAGACTGTTGAAGCAGAACGGATCTCAGTTGATCATGTTGCTCATCTTAAGCCATCTGATGGTGGTTCAGCAGCTACACAATTGGCTGCTCACCTTACTGGTATACACAGTGCCATCAAAATGCTTCATAGTAGAATAAAGGTGCTACATCACTATCTTCTTGCAATGCAAAAAGGTGATGTTCCCTGCGAGAATTCACTATTAAGACAAGTTTCAAGTCTCTTGAGAAGATTGCCTGCTATTGAATCTGGAAAATTTCAAGATGATTTCTTAATGGAATACAATGACACCTTATTGATTAGTTACCTAGCCATGCTGACCAACTGCTCAAGTGCAATGAATGAACTGGTGGACAAATTCAATACTGCGTATGATAGGCATAGCAGAAGGGGCGGGCGAACTGCTTTTATGTGA 951 0.4469 MASSSSSGLTFKLHPLVIVNISDHYTRVKSQMNPTLAPHNNAPNGGDGVVSSLPPRVYGCVIGVQKGRTVEIFNSFELLYDPSTHSLDRPFLEKKQELYKKVFPHFYILGWYSTGSDAQESDMHIHKALMDINESPVYVLLNPSINHSQKDLPVSIFESELHVIDGNPQLIFVRSSYTIETVEAERISVDHVAHLKPSDGGSAATQLAAHLTGIHSAIKMLHSRIKVLHHYLLAMQKGDVPCENSLLRQVSSLLRRLPAIESGKFQDDFLMEYNDTLLISYLAMLTNCSSAMNELVDKFNTAYDRHSRRGGRTAFM. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07781 316 Gene3D Cytidine Deaminase, domain 2 1 197 - -
Seca4g07781 316 Pfam Maintenance of mitochondrial structure and function 183 297 IPR024969 -
Seca4g07781 316 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT F-RELATED 3 307 - -
Seca4g07781 316 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 7 135 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca4g07781 316 CDD MPN_CSN6 9 312 IPR033859 GO:0000338|GO:0008180
Seca4g07781 316 ProSiteProfiles MPN domain profile. 11 163 IPR037518 -
Seca4g07781 316 SMART pad1_6 10 162 IPR000555 GO:0005515|GO:0008233|GO:0008237
Seca4g07781 316 FunFam COP9 signalosome subunit 6 1 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07781 Seca-Chr4 179181982 179195634 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07781 2 267 Eukaryotic Initiation Factors Gene Family AT2G39990 22.140 3.34e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07781 K12179 - gmx:100797079 599.356