Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07780 ATGGCTTCAAATTCGCAAAAGGATATTCCTGCTGATGACAAAGCTGGTTCAGCAGAGAATAAAAATTCCAAAGATGAAACATCCTCTAAAGATTCACCAGCAGGACAAAGATCTGCTCCTGGACCTGCAACTGGGTTGCCACCAAACCCTTTTGATTTCTCAGCCATGTCTGGCCTGCTCAATGATCCAAGTATCAAGGAATTGGCTGAACAAATAGCAAAAGATCCGTCATTCAATCAGATGGCTGATCAGCTTCAGAAAACTTTTCAAGGAGTAACACAGGATGGTGTCCCTAACTTTGATAATCAGCAATATTTTTCAACCATGCAACAGGTCATGCAGAATCCTAATTTTATGACCATGGCTGAGCGCCTGGGTAATGCATTGATGCAGGATCCATCTATGTCTTCCATGCTTGAAAGTTTTACTAATCCATCAAATAAAGATCAGCTTGAAGAGAGAATGTCACGCATCAAGGAAGATCCATCTTTGAAACATATTTTGGATGAGATAGAGACTGGTGGTCCTGCTGCTATGATGAGGTACTGGAATGACGAGGAGGTTTTGCGGAAGTTGGGACAAGCAATGGGCCTTGCAAATGCTGGAGAAGCAGCTGCTTCTGCTGAAAATTCTGGGCCAGATGAGACAGAAGAGTATGGAAATGAAGATGAATCAATTGTTCATCATACTGCTAGTGTTGGTGACGTGGAGGGCTTGAAAAATGCACTAGCCTCTGGTGCTGACAAGGATGAAGAAGATTCAGAAGGAAGAACTGCCTTGCATTTTGCCTGTGGATATGGCGAGGTGAAGTGTGCTCAAGTTCTCCTTGAGGCTGGTGCAAAAGTAGATGCTTTGGATAAGAATAAGAACACAGCTCTTCATTATGCAGCTGGTTATGGCAGGAAGGAATGTGTGGCCTTGCTTCTTGAAAACGGTGCTGCAGTGTAA 948 0.4357 MASNSQKDIPADDKAGSAENKNSKDETSSKDSPAGQRSAPGPATGLPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMADQLQKTFQGVTQDGVPNFDNQQYFSTMQQVMQNPNFMTMAERLGNALMQDPSMSSMLESFTNPSNKDQLEERMSRIKEDPSLKHILDEIETGGPAAMMRYWNDEEVLRKLGQAMGLANAGEAAASAENSGPDETEEYGNEDESIVHHTASVGDVEGLKNALASGADKDEEDSEGRTALHFACGYGEVKCAQVLLEAGAKVDALDKNKNTALHYAAGYGRKECVALLLENGAAV. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07780 315 PANTHER ANKYRIN REPEAT FAMILY PROTEIN 72 313 - -
Seca4g07780 315 MobiDBLite consensus disorder prediction 202 221 - -
Seca4g07780 315 Pfam Ankyrin repeats (3 copies) 231 313 IPR002110 GO:0005515
Seca4g07780 315 FunFam Ankyrin repeat domain-containing protein 2 215 292 - -
Seca4g07780 315 ProSiteProfiles Ankyrin repeat profile. 255 287 IPR002110 GO:0005515
Seca4g07780 315 Gene3D - 190 315 IPR036770 -
Seca4g07780 315 ProSiteProfiles Ankyrin repeat region circular profile. 288 315 - -
Seca4g07780 315 MobiDBLite consensus disorder prediction 1 58 - -
Seca4g07780 315 ProSiteProfiles Ankyrin repeat profile. 288 315 IPR002110 GO:0005515
Seca4g07780 315 ProSiteProfiles Ankyrin repeat region circular profile. 255 287 - -
Seca4g07780 315 SMART ANK_2a 222 251 IPR002110 GO:0005515
Seca4g07780 315 SMART ANK_2a 288 315 IPR002110 GO:0005515
Seca4g07780 315 SMART ANK_2a 255 284 IPR002110 GO:0005515
Seca4g07780 315 Pfam STI1 domain 154 197 IPR041243 -
Seca4g07780 315 SUPERFAMILY Ankyrin repeat 217 313 IPR036770 -
Seca4g07780 315 MobiDBLite consensus disorder prediction 12 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07780 Seca-Chr4 179145103 179152656 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07780 229 313 MAP Kinase Kinase Kinase AT3G58760 37.647 1.61e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07780 - - gmx:100797622 556.599