Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07779 ATGGCGATGCGTGACCTTATTACGGGCGCTACGGCGTGCCCTGACCCATCCGCTTCTTCTTCCTCCGCAAACCCTTTGGGCGCTCTCGCTAACGCCCTTATCGGTTCTTCCTCTAAGACTCAGGAGAGGCTGAAGGAAATTCCTACCTCCACTCCTACTGGCCCTGCCTCGCAATTTTACTCCGAACTTCCCAACCAGCTTCCTGGTTCGGAATTCGATAAGCCATTCCTGGATGCTAACTCTCAGGGGTCAGAGTTTTTTAATAGGTTCCGGTCTGCTGGTGCGGGTGGGCTTGAGGAAACGTGGGATGAGATACAGCGTGAGGGAAGAGTTAGCCAAATTCCATCTTCTCAACCACAACTCTATGATAGGGGACCGCCTCAACAGCTTCATCAACCTGCATTGGATGGGACACCACAAAGAGTTCTATCTAGCTTTTTGCACTCATTTCTTGATAGCAGCCGTGGTGGGATACCTTTTCATCCTGCCCCTCTTCCAATGTTGGGTTTATCTGAAGGTGATAAACAATGCATACGTGACCGTAGCAGCATAATGGCCAGGCATCTCTTTGCAGATAAAAGTGAAGAATTTATCAATGCTCAAGTAAATGCACTCCTAAGCTCTCTAGATATTGACAGCAATGTACGTGGTAAGGGACCAATGCCTGAAAGATTTCGGGAGCTTGAGGATTACTGGAATGAGTCTCAAGGCAACCTGAGACTTGGTGCTCATGCTGCAGATGGATGGATTGCTGAATACAGTCAAAATAGGGAAAAACATGATAATCCTGATTCTTGGGCTAACTCATTTGAGCACCAGTATGGTGTAAATGGTTGGGTCTCTGAATTTGAACATTCTCAATTGTCATCAGTAGATCAAATGCAAGGCATGAACATGTCAAACTTCGCTGCGATGGAGCAGACTCGTATGCTTGCAAATACATTGGCCCAGAATGCTGACCCTAAATTTCAGAACTCAAAGTTCCTTCAATTTGTATCAAAGATGAGCCGTGGTGAGCTGATTATTGATGACAATCAAGTTAAAGGGACTTCATTACCTGCATCTGGGGATTGGGCAGCAGAATACCAGCAGCAATATAATCATGGTGATGCATGGGCTGGTGAATTTTTAAATGATAAGGCATGTCCTCTGAGCTTGAAACCATATTCTTTTGCGAATGTTTATCATGGACCTGATCAGTGGGTAAATGAATTTACAACTGGAGGACAGCAGCATGGAGCAGTTGATGATCAGTGGGTCGATGAATTCTCAAAGTTGAATGTTAATGACTGGGCAGAGGAATTTGGTCAGCAGATTGGTGAAGGAGCTTCTGATAATTGGGCACATGCATATGATGAGTTCCTAAACGAGCAAGTTGCTGCCAAACAGCGGTCAGATAGTTCAAGGGGTGTATATGTCTTCTCAGATTTAAATCCTTATGTTGGTCATCCAAATCCACTAAAGGAAGGGCAAGATCTCTTCAGGAAAGGACTTTTAAGTGAAGCTGTTCTAGCATTGGAAGCTGAAGTCTTGAAAAACCCTGAAAATGCTGAAGGGTGGAGACTCCTTGGAATAGCACATGCAGAGAATGATGATGATCAACAGGCCATTGCAGCAATGATGCGTGCACAAGAGGCTGATCCAACAAATTTGGAAGTGCTTCTTGCTCTTGGTGTCAGTCATACAAATGAACTGGAACAAACAGCTGCTCTGAAGTATCTTTTTGGATGGTTACGCCATCACCCAAAGTATGGAACACTTGCCCCGCCTGAGATGCCTGATTCTTCTTTGTACTATGCTGATGTAGCTAGAGTATTCAATGAAGCAGCTGAAATCTCACCTGATGATGCAGATGTCCACATAGTTCTTGGGGTCCTGTACAACTTATCTAGAGAATATGACAAAGCCATTGCATCTTTTCAAAGAGCATTGAAACTTAAGCCGCAGGATTACTCTCTCTGGAACAAGCTTGGTGCAACACAAGCAAACAGTGTTCAAAGTGCCGATGCAATAATGGCTTATCAACAGGCACTAGATTTAAAGCCTAATTATGTTCGTGCTTGGGCAAATATGGGTATCAGCTATGCAAACCAAGGCATGTATGACGACTCTATTCGTTATTATGTTCGAGCTCTTGCCATGAATCCAAAAGCAGAGAATGCATGGCAATATTTGAGAATTTCATTGAGCTGTGCTTCCAGGAATGACTTGTTGGAAGCTTGTGACAGTCGTAATCTGGACCTTCTCCAGAAGGAGTTTCCTCTACAGTAA 2271 0.4439 MAMRDLITGATACPDPSASSSSANPLGALANALIGSSSKTQERLKEIPTSTPTGPASQFYSELPNQLPGSEFDKPFLDANSQGSEFFNRFRSAGAGGLEETWDEIQREGRVSQIPSSQPQLYDRGPPQQLHQPALDGTPQRVLSSFLHSFLDSSRGGIPFHPAPLPMLGLSEGDKQCIRDRSSIMARHLFADKSEEFINAQVNALLSSLDIDSNVRGKGPMPERFRELEDYWNESQGNLRLGAHAADGWIAEYSQNREKHDNPDSWANSFEHQYGVNGWVSEFEHSQLSSVDQMQGMNMSNFAAMEQTRMLANTLAQNADPKFQNSKFLQFVSKMSRGELIIDDNQVKGTSLPASGDWAAEYQQQYNHGDAWAGEFLNDKACPLSLKPYSFANVYHGPDQWVNEFTTGGQQHGAVDDQWVDEFSKLNVNDWAEEFGQQIGEGASDNWAHAYDEFLNEQVAAKQRSDSSRGVYVFSDLNPYVGHPNPLKEGQDLFRKGLLSEAVLALEAEVLKNPENAEGWRLLGIAHAENDDDQQAIAAMMRAQEADPTNLEVLLALGVSHTNELEQTAALKYLFGWLRHHPKYGTLAPPEMPDSSLYYADVARVFNEAAEISPDDADVHIVLGVLYNLSREYDKAIASFQRALKLKPQDYSLWNKLGATQANSVQSADAIMAYQQALDLKPNYVRAWANMGISYANQGMYDDSIRYYVRALAMNPKAENAWQYLRISLSCASRNDLLEACDSRNLDLLQKEFPLQ. 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07779 756 ProSiteProfiles TPR repeat profile. 517 550 IPR019734 GO:0005515
Seca4g07779 756 PANTHER PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 1 753 IPR024111 -
Seca4g07779 756 Pfam Tetratricopeptide repeat 686 717 IPR001440 GO:0005515
Seca4g07779 756 Pfam Tetratricopeptide repeat 617 650 IPR001440 GO:0005515
Seca4g07779 756 SMART tpr_5 617 650 IPR019734 GO:0005515
Seca4g07779 756 SMART tpr_5 517 550 IPR019734 GO:0005515
Seca4g07779 756 SMART tpr_5 685 718 IPR019734 GO:0005515
Seca4g07779 756 SMART tpr_5 651 684 IPR019734 GO:0005515
Seca4g07779 756 MobiDBLite consensus disorder prediction 37 65 - -
Seca4g07779 756 MobiDBLite consensus disorder prediction 1 24 - -
Seca4g07779 756 MobiDBLite consensus disorder prediction 107 128 - -
Seca4g07779 756 SUPERFAMILY TPR-like 468 755 IPR011990 GO:0005515
Seca4g07779 756 ProSiteProfiles TPR repeat profile. 685 718 IPR019734 GO:0005515
Seca4g07779 756 Gene3D Tetratricopeptide repeat domain 466 756 IPR011990 GO:0005515
Seca4g07779 756 ProSiteProfiles TPR repeat region circular profile. 685 717 - -
Seca4g07779 756 Pfam Tetratricopeptide repeat 487 549 - -
Seca4g07779 756 ProSiteProfiles TPR repeat profile. 617 650 IPR019734 GO:0005515
Seca4g07779 756 ProSiteProfiles TPR repeat profile. 651 684 IPR019734 GO:0005515
Seca4g07779 756 MobiDBLite consensus disorder prediction 110 125 - -
Seca4g07779 756 ProSiteProfiles TPR repeat region circular profile. 617 650 - -
Seca4g07779 756 FunFam Peroxisome biogenesis protein 5 466 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07779 Seca-Chr4 179089539 179118168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07779 630 748 Glycosyltransferase AT3G04240 31.933 8.58e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07779 K13342 - gmx:100527272 1274.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07779 4 179089539 179118168 Seca4g07779 4 179089539 179118168 ECH