Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07777 ATGCTATACTTGAACAGGAAAGTTAGTGTGATGGATTTGTCTAAAAAGTTTGGGCTTGAATATCGATTGCTTCATGCAATTACCAAAGGGCGCACTTGGTATGGCAACTGGGGTTATGAATTTGGCACTGGCAGCTATGCTCTAACTCAAGATGTTTACCAGAAAGCAGTGAATACCCTGTCATATATGCCCTTGTCCTCTTTCTTATTCCAGGGTCGTGGGACTCGAAATCGCCTGCAGAGTGTCATCACTCTTTACCAATCTCTGGCTGATACTGAACTTCTAACAATTAAAGATCTCTTCTCCTTTTTGTTGACATTGATTCCGGAATTCCGCAAGCCCCTGATCACGAGAACATCTGAACAACATGAATGCACCAGCACTTCTAATGTTTTGTGTGCTTGGACAAGTAATGATGTTGAAGATGTGCAAAAAGCTTTCATTAAGGTGTTGCTTGCATCAAGTGCCTGTAGTGAGAACAAATGGGTGAGTTGGCGTGCTCTCAAGGGTGCATTATGCAGAGGGGTTGCTTCTCCTGAGCTTCTAGATTATAGTCTTAAGCACTTAGGAGGGAATTTAGTTGCCAATGGCATGGTAGTTCGATCACAATGCAATCCCATTTCTAGTGCGGTGGAGTTTAGGCTTGAACCATTGAGTAATATGCATAATGGAATTGGTGCAATCTCAAACTATCCATCAGAAGAGCAAGTGATATCTGATCTGAGGTTTTTATTTGATTCAATTGTTCATCCTGACAAAATGGTGAGCACTGGATCTCGGGTTATGAAGAAACGAGTGGCTGATTCAGCAAGGAAGCTCTTAGACTGTAAGCAATTCATGAAGGATTATTACAAGCCTGAAAAGGTGGAAGAACTGCCTTCAGCCATTAAGCTTTGGTGTAGTGTGGAGCTTTCTGATCAGCCTAAAGATGAACCATCCCCACCACCAGAGCTTATTATCTTGCCTTTGAATGCTACTGTTGCTAACCTTAAGAGTGAAGCCAATAGTGTTTTTCAAGAAGTATATGTGATGTATAAGAGATTTCAGGCCGAGAATCTCCTAGGATATGGATCAATTAGTGATTCGTACACCTTAAAATTCTTGCTTGGAACAAGTGGGTCTGTCCGAATTCAAGGAAAATGTCTAGCTAAACATGGACTAAACCGTTTCCGAATGGAAAGAGGAACTGAAACATGGAAAGTTGATTGCATTTGTGGAGCTAAGGATGATGATGGAGAAAGAATGTTAGCATGTGATACCTGTGGTGTTTGGCTACATACCAGATGTGCTGGGATTAAGAACTCTGATGCTATTCCTTCAAAGTTTGTGTGTATGAGATGCGTAAACTCCTACCGTAGGGAAGCCAAAAAACTGCAAGACTCTAATGGGGAAGCTTATAAATCCAACACAACCTGCAGAGGTGAAGTGGTGGCAACTGATAATCCAGCAATTGCTCGTAACATGACTGTAAATTTTGGTGTACGTTAA 1488 0.416 MLYLNRKVSVMDLSKKFGLEYRLLHAITKGRTWYGNWGYEFGTGSYALTQDVYQKAVNTLSYMPLSSFLFQGRGTRNRLQSVITLYQSLADTELLTIKDLFSFLLTLIPEFRKPLITRTSEQHECTSTSNVLCAWTSNDVEDVQKAFIKVLLASSACSENKWVSWRALKGALCRGVASPELLDYSLKHLGGNLVANGMVVRSQCNPISSAVEFRLEPLSNMHNGIGAISNYPSEEQVISDLRFLFDSIVHPDKMVSTGSRVMKKRVADSARKLLDCKQFMKDYYKPEKVEELPSAIKLWCSVELSDQPKDEPSPPPELIILPLNATVANLKSEANSVFQEVYVMYKRFQAENLLGYGSISDSYTLKFLLGTSGSVRIQGKCLAKHGLNRFRMERGTETWKVDCICGAKDDDGERMLACDTCGVWLHTRCAGIKNSDAIPSKFVCMRCVNSYRREAKKLQDSNGEAYKSNTTCRGEVVATDNPAIARNMTVNFGVR. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07777 495 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 453 IPR013083 -
Seca4g07777 495 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 5 461 - -
Seca4g07777 495 SUPERFAMILY FYVE/PHD zinc finger 393 451 IPR011011 -
Seca4g07777 495 ProSiteProfiles Zinc finger PHD-type profile. 400 450 IPR019787 -
Seca4g07777 495 ProSitePatterns Zinc finger PHD-type signature. 403 447 IPR019786 -
Seca4g07777 495 Pfam PHD-finger 403 449 IPR019787 -
Seca4g07777 495 SMART PHD_3 402 448 IPR001965 -
Seca4g07777 495 CDD PHD_MMD1_like 402 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07777 Seca-Chr4 179049857 179053306 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07777 6 447 PHD Transcription Factor Family AT5G22260 27.848 9.61e-63 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca4g07777 PHD 1.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07777 K26271 - gmx:100780558 704.131