Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07744 ATGGGAATCTTGGGAAAGAAGTTCCTAACATTCTTATTGTTATCTTCAATTTTCTCAATAGCCTCATCAAGAAGAGGACCTTCCTCCAGCAACATAGAATGGTGGTGCAACCTAACCCCACACCCTGGATCATGCAAATACCACACAAGTCAAATGAACCATCATTATTTCACAATCAAACACAGAACTGAATTCAGGGGAATGCTTGTTCAACTGGCTTTAAAACAAGCACTTAACATGCATAGGGAAGCACAACATGATTCTGAACAGAACATGGTGACAGAGAAGCATAGAACTGTACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAAGCCTTCATGTGAAGAGGGGCTTTTCACCGGTTGATGCACAAACATGGCTCAGCACTGCTCTCACAAACATTGAAACGTGTAGAACAGGAGCTATAGAACTCAATGCTCAAGATTTCAAGGTGCCAACAGGGAGCAACAATGTTACAGAGATGATAAGGAACAGCTTAGCTGTCAATGTGAATTTCACGAAACATTATGCAGCAAATCACACAGCAGAAGCAGAAGATGCATTTCCAAGTTGGTTTTCTAGGCATGAGAGGAAATTGTTGCAGTCATCTTCAATAAAGGCACATCTCGTGGTAGCAAAAGATGGTTCAGGACAATTCAAAAGGGTTCAAGATGCTCTGAATGCAGCAGCAAAGAGAAGATATAAAACGAGGTATGTGATATATGTGAAGAAAGGAGTATACAGAGAGAACATTGAGGTTGCTGTGAACAATGATAACATTATGTTGGTTGGTGATGGGATGAAAAACACAATAATAACAAGCGGCAGAAGTGTTCAAGATGGTTTTACCACTTATAGTTCTGCTACAGCTGGCATAGATGGTCTTCACTTCATTGCACGTGACATTACCTTCCAAAACACCGCCGGTCTTCACAAAGGTCAAGCCGTAGCACTACGATCAGCTTCGGATCTCTCAGTGTTCTACAGATGTGCCATAGTAGGTTACCAAGACACCCTTATGGTTCATGCACAGCGTCAATTTTACAGACAATGCAAAATATATGGCACCGTAGACTTCATCTTTGGCAATGCAGCAGTTGTTTTTCAGAATTGTAACATCTTTGCAAGAAAGCCTTTAGATGGACAAGCCAACATGATCACGGCCCAAGGTAGAGGAGACCCATTCCAAAACACTGGAATTTCCTTCCACAATTGTCAAATCAAGGCCGCAGGAGACCTAAAGCCCGTTGTTGACAAATACAACACCTTCTTGGGTAGGCCATGGCAGCAATACTCAAGAGTAGTGGTCATGAAAACCTTCATGGACTCCTTGGTGAACCCATTGGGTTGGTCTCCATGGGATGATACTAATTTTGCTCAAGACACACTGTATTATGGAGAATATGAGAATTATGGGCCTGGTTCATCTACAGCCAACAGAGTAAAGTGGCCTGGTTTTCATGTCATAAAGAGTCCAGTTGAGGCATCACAGTTCATAGTCACTGGACTCCTTGCTGGCCCCACATGGTTGCCTGCCACAACTGTACCATTTACCTCTGGCCTTTGA 1596 0.4261 MGILGKKFLTFLLLSSIFSIASSRRGPSSSNIEWWCNLTPHPGSCKYHTSQMNHHYFTIKHRTEFRGMLVQLALKQALNMHREAQHDSEQNMVTEKHRTVHGDCLKLYENTIFHLNRTLESLHVKRGFSPVDAQTWLSTALTNIETCRTGAIELNAQDFKVPTGSNNVTEMIRNSLAVNVNFTKHYAANHTAEAEDAFPSWFSRHERKLLQSSSIKAHLVVAKDGSGQFKRVQDALNAAAKRRYKTRYVIYVKKGVYRENIEVAVNNDNIMLVGDGMKNTIITSGRSVQDGFTTYSSATAGIDGLHFIARDITFQNTAGLHKGQAVALRSASDLSVFYRCAIVGYQDTLMVHAQRQFYRQCKIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIKAAGDLKPVVDKYNTFLGRPWQQYSRVVVMKTFMDSLVNPLGWSPWDDTNFAQDTLYYGEYENYGPGSSTANRVKWPGFHVIKSPVEASQFIVTGLLAGPTWLPATTVPFTSGL. 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07744 531 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 179 IPR035513 -
Seca4g07744 531 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
Seca4g07744 531 SMART PMEI_2 27 178 IPR006501 GO:0004857
Seca4g07744 531 NCBIfam pectinesterase inhibitor domain 8 179 IPR006501 GO:0004857
Seca4g07744 531 Pfam Pectinesterase 219 515 IPR000070 GO:0030599|GO:0042545
Seca4g07744 531 SUPERFAMILY Pectin lyase-like 214 530 IPR011050 -
Seca4g07744 531 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Seca4g07744 531 FunFam Pectinesterase 212 531 - -
Seca4g07744 531 CDD PMEI-like_3 34 184 - -
Seca4g07744 531 Pfam Plant invertase/pectin methylesterase inhibitor 31 177 IPR006501 GO:0004857
Seca4g07744 531 PANTHER PECTINESTERASE 18 523 - -
Seca4g07744 531 Gene3D - 211 531 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07744 Seca-Chr4 177673918 177676574 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07744 26 531 Carbohydrate Esterase AT3G47400 56.564 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07744 K01051 - gmx:100806133 835.484