Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07740 ATGGAAATCTTAGGAAAGACATTCCTCACACTCTTATTGTTATCTTCAGTTTTCTCATTAGCTTCATCAAGAAGAGAACCATCCTCCAGCAACATAGATTGGTGGTGCAATCTAACCCCACATCCTGGGCCATGCAAATACCACATAAGTCAATTGAACCAACATTTCACAATCAAACACAGAACTGAATTCAGGGGAATGCTTGTTCAATTGGCCTTAAATCAAGCACTTAACATGCAAAGGAAAGCACATGATTCTGAACAGAACATGGTGACAGAGAAGCATAGAACTGTACATGGTGATTGTTTGAAGCTGTATGAAAACACCATCTTTCATCTCAATCGTACCCTTGAAAGCCTTCAGGTTAAGAGGGGCTTTTCACCGGTTGATGCACAAACTTGGCTCAGCACTGCTCTCACAAACATTGAAACGTGTAGAACAGAAGCTATAGAACTCAATGCTCAAGATTTCAAGGTGCCAACAGGGAGCAACAATGTCACTGAGATGATAAGGAACAGCTTAGCCATCAATATGAATTTAATGAAACATAATTCAGCAAATCACACAGCAGAAGCAGAAGATGCGTTTCCAAGTTGGTTTTCTAGGCATGAGAGGAGACTGTTGCAGTCTTCTTCAATAAAGGCACATCTTGTGGTAGCAAAAGATGGTTCAGGACAATTCAAAAGGGTCCAAGATGCTCTGAATGCAGCGGCAAAGAGAAGATATAAAACGAGGTATGTGATATATGTGAAGAAAGGAGTATACAGAGAGAACATTGAGGTTGCTGTGAACAATGATAACATCATGTTGGTTGGTGATGGGATGAAAAACACAATAATAACGAGTGGCAGAAGTGTTCAAGATGGTTTTACCACTTATAGCTCTGCAACAGCTGGCATAGAAGGTCTTCACTTCATTGCACGTGACATTACCTTCCAAAACACCGCTGGTCCTCACAAGGGTCAAGCCGTGGCACTTCGATCAGCTTCAGATCTCTCAGTGTTCTACAGATGTGCCATAATAGGTTACCAAGACACCCTTATGGTTCATGCACAGCGCCAATTTTACAGGCAATGCAAAATATATGGCACTGTAGACTTCATCTTTGGCAATGCAGCAGTGGTTTTTCAGAATTGTAACATCTTTGCAAGAAAGCCTTTGGATGGCCAAGCAAACATGATCACGGCCCAAGGACGAGGAGACCCATTCCAAAACACTGGAATTTCCTTCCACAATTGTCAAATCAAGGCCGCAGCAGACCTAAAGCCCGTTGTTGACAAATACAACACGTTCTTGGGCAGGCCATGGCAGCAATACTCAAGAGTAGTGGTCATGAAAACCTTCATGGACTCCTTGGTGAACCCATTGGGTTGGTCTCCTTGGGGTGATACTGATTTTGCCCAGGACACACTGTATTATGGAGAGTATGAGAACTATGGGCCTGGTTCATCTACTGCCAACAGAGTAAAATGGCCTGGTTTTCATGTCATAAAAAGCCCAGCTGAGGCCTCGCAATTCACAGTCACTGGACTCCTTGCTGGCGCCACATGGTTGCCTACCACAACTGTGCCATTTACCTCTGGCCTATGA 1590 0.4346 MEILGKTFLTLLLLSSVFSLASSRREPSSSNIDWWCNLTPHPGPCKYHISQLNQHFTIKHRTEFRGMLVQLALNQALNMQRKAHDSEQNMVTEKHRTVHGDCLKLYENTIFHLNRTLESLQVKRGFSPVDAQTWLSTALTNIETCRTEAIELNAQDFKVPTGSNNVTEMIRNSLAINMNLMKHNSANHTAEAEDAFPSWFSRHERRLLQSSSIKAHLVVAKDGSGQFKRVQDALNAAAKRRYKTRYVIYVKKGVYRENIEVAVNNDNIMLVGDGMKNTIITSGRSVQDGFTTYSSATAGIEGLHFIARDITFQNTAGPHKGQAVALRSASDLSVFYRCAIIGYQDTLMVHAQRQFYRQCKIYGTVDFIFGNAAVVFQNCNIFARKPLDGQANMITAQGRGDPFQNTGISFHNCQIKAAADLKPVVDKYNTFLGRPWQQYSRVVVMKTFMDSLVNPLGWSPWGDTDFAQDTLYYGEYENYGPGSSTANRVKWPGFHVIKSPAEASQFTVTGLLAGATWLPTTTVPFTSGL. 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07740 529 CDD PMEI-like_3 34 182 - -
Seca4g07740 529 FunFam Pectinesterase 210 529 - -
Seca4g07740 529 NCBIfam pectinesterase inhibitor domain 8 180 IPR006501 GO:0004857
Seca4g07740 529 SMART PMEI_2 27 176 IPR006501 GO:0004857
Seca4g07740 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 27 182 IPR035513 -
Seca4g07740 529 Pfam Pectinesterase 217 514 IPR000070 GO:0030599|GO:0042545
Seca4g07740 529 ProSitePatterns Pectinesterase signature 2. 361 370 IPR033131 -
Seca4g07740 529 Gene3D - 210 529 IPR012334 -
Seca4g07740 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 180 IPR035513 -
Seca4g07740 529 SUPERFAMILY Pectin lyase-like 212 528 IPR011050 -
Seca4g07740 529 PANTHER PECTINESTERASE 17 520 - -
Seca4g07740 529 Pfam Plant invertase/pectin methylesterase inhibitor 31 176 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07740 Seca-Chr4 177525510 177527293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07740 26 529 Carbohydrate Esterase AT5G51500 57.171 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07740 K01051 - gmx:100806133 842.417