Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07739 ATGAATAACTTTTCTCATGTTCCCCCAGGCTTTAGGTTCCATCCAACGGATGAAGAACTTGTTGATTACTATCTGAGGAAGAAAGTTACTTCAAGGAGGGTCGACCTCGATGTCATAAAAGATGTTGATCTCTATAAAATTGAGCCATGGGATCTTCAAGAGCTTTGCAGAATAGGAACAGAAGAGCAAAATGAATGGTACTTCTTTAGTCATAAAGATAAGAAGTATCCAACTGGAACTCGCACAAATAGAGCAACAGCAGCAGGGTTTTGGAAGGCAACTGGGAGAGACAAAGCAATCTATTCTAAGCATGACTTGATAGGAATGAGGAAAACATTAGTGTTTTATAAAGGTCGAGCCCCAAATGGTCAAAAATCAGATTGGATCATGCATGAGTATCGCCTTGAAACAGATGAGAGTGGCACACCACAGGAAGAAGGATGGGTTGTGTGTAGAGTATTCAAAAAGAGACTAACAACCATGCGTAAGCTGAGTGAGCATGATTCTCCCTGTTGGTATGATGACCAGGTCTCTTTCATGCAAGACTTGGACTCACCAAACCAAACTTCTCAACAAAACAACTTGCCCTACCACCACTTCCCATATCCTTGCAAGAAAGAGCTAGATTTGCCATACCATGTGCCACGTGAGCACTTTCTCCAGCTTCCATTGGATAACCAAAAACTTCTTCAATCTGCTCCCAATAATATTACAATGGCAGCATATGGCATAGAAGAAAACCATGCAGCATCAATCTTGCAACAAGTTCAACAAACTAGTAATGTTCATCAGCAAAACCTTCATCAGGGAGCAGTGTTTGGAAACAATAATTCCAATGAACAAGTGGCTGCTGATTGGAGAGCTCTTGACAAGTATGTTGCTTCACAACTTAGTCAAGAAGACCATCATGTAATAACCAAAGACAATAGCTACTCAAATGCTGCAGGTAATAACATGTTTCATGTGAAGAACAATAGCAATATTGAACAGTTCAGAGACTTGGACAAGCAAGAAATTATGCCTGAAAATGCATCAACATCAAACTCCAGCTGTCCAATTGACATGTGGAAATAG 1074 0.4041 MNNFSHVPPGFRFHPTDEELVDYYLRKKVTSRRVDLDVIKDVDLYKIEPWDLQELCRIGTEEQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAIYSKHDLIGMRKTLVFYKGRAPNGQKSDWIMHEYRLETDESGTPQEEGWVVCRVFKKRLTTMRKLSEHDSPCWYDDQVSFMQDLDSPNQTSQQNNLPYHHFPYPCKKELDLPYHVPREHFLQLPLDNQKLLQSAPNNITMAAYGIEENHAASILQQVQQTSNVHQQNLHQGAVFGNNNSNEQVAADWRALDKYVASQLSQEDHHVITKDNSYSNAAGNNMFHVKNNSNIEQFRDLDKQEIMPENASTSNSSCPIDMWK. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07739 357 Pfam No apical meristem (NAM) protein 8 135 IPR003441 GO:0003677|GO:0006355
Seca4g07739 357 ProSiteProfiles NAC domain profile. 7 156 IPR003441 GO:0003677|GO:0006355
Seca4g07739 357 SUPERFAMILY NAC domain 4 156 IPR036093 GO:0003677|GO:0006355
Seca4g07739 357 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 6 295 - -
Seca4g07739 357 Gene3D NAC domain 16 159 IPR036093 GO:0003677|GO:0006355
Seca4g07739 357 FunFam NAC domain-containing protein 16 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07739 Seca-Chr4 177416038 177421447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07739 1 357 NAC Transcription Factor Family AT1G12260 55.795 1.17e-130 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g07739 NAM 5e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07739 - - gmx:100809321 562.762