Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07728 ATGTTATTAGACCTGGATCCAATGGACCTGAAGCCAAATCATTCTCCTCTCCTTACTGATACTGCAACCTTAACAAGGACAAGGTCAAGGCTGGGTGTGGCTTCTGGTGTGTTACCTTGCTCTCCTACAGGGGCTGCAACCTTTCCACATGGTCCCTTGCTGTCAATTCCAAGGAAGAAGACAGGAATTCTTGATGATGTTCGTTCTAATGGTTGGCTGGATGCTATGAAATCATCTTCTCCTACTCACAAGAAGATATCAAAGGATGTTGGCCATGGGATTGCATCTTCTGATTCTGATGCTGCTTATTTTGCCTGGCTGCTAAAGTTTCCATCAGCTCTTGCATCTTTTGAGCAAATTACTAACTATGCAAAAGGCAAGAGAATAGCATTGTTTCTGGATTATGATGGGACTCTTTCACCAATTGTGGACAATCCTGACTGTGCTTTCATGTCCGACAGTATGCGTGCTGCTGTTAAACAAGTGGCAGAATATTTTCCTACAGCAATAATTAGTGGAAGGAGCCGTGAGAAGGTGTATGAATTTGTTGGAGTAACAGAACTCTATTATGCTGGTAGTCATGGAATGGACATTGGTTGTCCTCTTAGACAAGCTGTGTCTGATAATAACACTAATTGCATTAGGTCTACTGACAAGCAGGGTAATGAAGTTAATTTATTCCAACCTGCTGCTGAATTCTTGCCCATGATTGATGAGGTACGTAGGTTGCTCATAGAGTGTACAAAAGACATCAAAGGAGCAAAAGTTGAGAACAATAAATTTTGTGTCTCTGTGCATTACCGAAATGTAGATGAAAAGATTTGGGATGTGGTGGGACAACGCGTATATGATGTTATGAAGGACTTTCCACGGTTACGATTAACTCATGGGCGGAAGGTTTTAGAAGTCCGACCCATAATTGACTGGGATAAGGGAAAAGCTGTCACATTTTTGCTTGAGTCACTTGGACTTAATGATGGTGATGACGTGCTAGCTATATATGTTGGAGATGATCGGACAGATGAAGATGCATTTAAGGTTTTGAGAGAAGTTAATAAAGGTTGTGGCATCTTGGTATCCTCCGCACCAAAAGAAAGCAACGCAGTTTACTCTCTTCGTGATCCTTCAGAGGTCATGGAATTTCTCAAGTCACTTGTGGTATGGAAATCAAGCTCGGTAAAAAGCTTTATATAA 1194 0.4154 MLLDLDPMDLKPNHSPLLTDTATLTRTRSRLGVASGVLPCSPTGAATFPHGPLLSIPRKKTGILDDVRSNGWLDAMKSSSPTHKKISKDVGHGIASSDSDAAYFAWLLKFPSALASFEQITNYAKGKRIALFLDYDGTLSPIVDNPDCAFMSDSMRAAVKQVAEYFPTAIISGRSREKVYEFVGVTELYYAGSHGMDIGCPLRQAVSDNNTNCIRSTDKQGNEVNLFQPAAEFLPMIDEVRRLLIECTKDIKGAKVENNKFCVSVHYRNVDEKIWDVVGQRVYDVMKDFPRLRLTHGRKVLEVRPIIDWDKGKAVTFLLESLGLNDGDDVLAIYVGDDRTDEDAFKVLREVNKGCGILVSSAPKESNAVYSLRDPSEVMEFLKSLVVWKSSSVKSFI. 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07728 397 CDD HAD_TPP 130 380 - -
Seca4g07728 397 FunFam Trehalose 6-phosphate phosphatase 236 395 - -
Seca4g07728 397 Pfam Trehalose-phosphatase 132 376 IPR003337 GO:0003824|GO:0005992
Seca4g07728 397 SUPERFAMILY HAD-like 130 387 IPR036412 -
Seca4g07728 397 NCBIfam HAD-IIB family hydrolase 131 349 IPR006379 -
Seca4g07728 397 NCBIfam trehalose-phosphatase 126 386 IPR003337 GO:0003824|GO:0005992
Seca4g07728 397 Gene3D - 227 395 IPR023214 -
Seca4g07728 397 Gene3D - 129 219 IPR023214 -
Seca4g07728 397 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 39 393 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07728 Seca-Chr4 177049626 177054052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07728 123 385 Trehalose Biosynthesis Gene Families AT1G70290 26.786 9.70e-13 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07728 K01087 - gmx:100783008 606.675