Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07716 ATGGATAGGATTCAAGAGGCAAATGAAAATAAATCTCAGCGTTCCTCCTCTTCAATGGTAGCTATAGCAATCAAGGGTAACAAGAAAAGCAAATATGTGGTACAGTGGGCACTTAATAAGTTTGTTCCAGAGGGAATGATTATCTTCAAGCTGATACATGTCCAAGCTGGTATAAAAGGAGTTCCAACACCAATGGGAAATGTGATCCCCCTCTCACAAGTGCGTAATGATGTAGCAACTGCTTACAAAAAGGAAGTGGAGTGTCAAACAAATCAAATGCTTCTACCTTTAAAGAAAATGTGTGAGCAGAGAAAGGTACATGTAGATGCTGTAGTGATTGAATCAGATGACGTGGCAACTTCAGTAGCAGAGGAAGTAGCTAAGGGTGCTATAACCAAACTTGTGGTTGGAGCTTCATCTAGTGGCATATTTAAAAGTAAACATAAGGGTATGTCTGCAAAAATCTCAGTATGCACTCCAAGATTTTGTACAGTCTATGCTATTTCAAAAGGAAAATTGTCCATACGGCCATCAGACCTGCAGATTGATCATGGAAGCATTATAGATGACATTAGTGAAACCAGTTTTTCCTCCAACAGCTCATCAAACTACACTTCCACCACTCAGACAGAGTCTGGCTCAGTTACATCTTATGCTGCTTTACATTCCTCTTCCCTAGCAACGCAGCGATTTCAAGCTCTCTCAAGTATAAATCAGACCCTTCTTAGCACAACTCCTAGTTTAAATGAACCTATTCATTCTAGAGGCCAGTCTCTAGATCTTGGAAAAGAAAATGCTACCACAAGTTCTGCTAGAAACTCTGATATTGATCATGCTCTGAGTCGGGCCTCTAGTTGCAGAAGCGTTATGTCAGATACTGAATCTTGGATTTATGATCAAATTTCTGTCAAGGATGTGCCACTAGCAACTAAACTTCTGTCACCAAATAGGCAGGAAAATTTTAACCTTGAGCTGGAAAAGTTGAGAATTGAACTAAGACATGCCCAAGGAATGCATGCAATAGCTCAAAGTGAGAACATTGATGCATCACGGAAGCTGAATGAACTGAGCAAGAGGAGATCAGAAGAATCCATGAAAATGAAGGAGATTATTGCTAAGGAGGAGATGGCCAAAGAATTAGCAAGACAAGAAAGAGAGAAATATGAAACTGCAGCAAGGGAAGCCTCATATTTGAAAGAATGTGCTGAAAGAGAAGCAGCAGAAAGAAAGGAAACAGAATTGAAAGCTATTCGTGCTGCCAAAGAGAAAGAAAAGCTGGAGGATGCTCTAAGTGGTTCAATGCCCCAGTACCGGAAGTTTACATGGGATGAAATAGTTTCAGCTACTTCATCGTTCTCTGAAGATCTGAGAATTGGAATGGGAGCATATGGAATTGTGTATAAGTGCATTTTGCATCATACAACTGTTGCTGTGAAAGTTCTTCACTCTAATGGAAACCGCAAAAGCAAGCAATTCCAGCAGGAGTTAGAGATATTGAGCAGAATTCGTCATCCAAACTTGCTACTTCTTCTTGGTGCATGTCCTGAACAAGGATGTCTTGTATATGAATATATGGAGAATGGTAACTTGGAGGATAGACTACTCCAGAAAAACAATACTGCCCCAATCCCATGGTTTGAGAGGTTTCGAATAGCTTGGGAAGTTGCATCAGCTCTTTCCTTTCTTCACAGCTCAAAGCCAGAACCTATCATCCATCGTGACTTGAAACCAGCAAACATCTTGCTTGGCCGTAACCTTGTCAGCAAGATTGGTGATATAGGCCTTTCTACAATGCTCCATTCAGATAATTTATCTACCATGTATAAGGACACAGAACCTGTTGGGACACTCTGCTACATAGATCCTGAGTATCAAAGGACTGGGTTAATATCTCCTAAATCTGATGTTTATGCTTTTGGAATGGTGATCTTACAGTTATTGACAGCAAAACCAGCAATAGCACTTACTCATGTGGTTGAAACAGCAATTGATGACGGGAATTTAACAGATATATTGGATCCAGAGGCAGGGCCATGGCCATTTCAAGAAACATTAGACTTAGCTCGGTTAGGACTGAGCTGTGCAGAGCTTCGGCGTAGAGACCGGCCTGATTTAAAAGATCACGTTCTTCCAACACTAGAGAGATTGAAAGAAGTTGCTGATAGGGCTCAACATTCTGCTTCCATTGTTCCTATTAAATCCAGACCTCCTAATCACTTTATCTGTCCAATACTTCAGGATGTGATGGATGATCCTTGTGTTGCTGCGGATGGATATACATATGATCGCAAAGCAATTGAAAAGTGGCTTCAAGAGAATGACAAATCACCAATGACAAATATGGCTTTGCCTCATAAGCATCTAATTCCTAATTACACACTTCTGTCAGCAATTATGGAGTGGAAGTCCAGTGAAATATGA 2421 0.406 MDRIQEANENKSQRSSSSMVAIAIKGNKKSKYVVQWALNKFVPEGMIIFKLIHVQAGIKGVPTPMGNVIPLSQVRNDVATAYKKEVECQTNQMLLPLKKMCEQRKVHVDAVVIESDDVATSVAEEVAKGAITKLVVGASSSGIFKSKHKGMSAKISVCTPRFCTVYAISKGKLSIRPSDLQIDHGSIIDDISETSFSSNSSSNYTSTTQTESGSVTSYAALHSSSLATQRFQALSSINQTLLSTTPSLNEPIHSRGQSLDLGKENATTSSARNSDIDHALSRASSCRSVMSDTESWIYDQISVKDVPLATKLLSPNRQENFNLELEKLRIELRHAQGMHAIAQSENIDASRKLNELSKRRSEESMKMKEIIAKEEMAKELARQEREKYETAAREASYLKECAEREAAERKETELKAIRAAKEKEKLEDALSGSMPQYRKFTWDEIVSATSSFSEDLRIGMGAYGIVYKCILHHTTVAVKVLHSNGNRKSKQFQQELEILSRIRHPNLLLLLGACPEQGCLVYEYMENGNLEDRLLQKNNTAPIPWFERFRIAWEVASALSFLHSSKPEPIIHRDLKPANILLGRNLVSKIGDIGLSTMLHSDNLSTMYKDTEPVGTLCYIDPEYQRTGLISPKSDVYAFGMVILQLLTAKPAIALTHVVETAIDDGNLTDILDPEAGPWPFQETLDLARLGLSCAELRRRDRPDLKDHVLPTLERLKEVADRAQHSASIVPIKSRPPNHFICPILQDVMDDPCVAADGYTYDRKAIEKWLQENDKSPMTNMALPHKHLIPNYTLLSAIMEWKSSEI. 807
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07716 806 Gene3D Transferase(Phosphotransferase) domain 1 525 732 - -
Seca4g07716 806 Coils Coil 318 345 - -
Seca4g07716 806 Gene3D HUPs 11 150 IPR014729 -
Seca4g07716 806 MobiDBLite consensus disorder prediction 245 274 - -
Seca4g07716 806 Pfam U-box domain 737 803 IPR003613 GO:0004842|GO:0016567
Seca4g07716 806 SMART Ubox_2 739 801 IPR003613 GO:0004842|GO:0016567
Seca4g07716 806 ProSiteProfiles U-box domain profile. 735 806 IPR003613 GO:0004842|GO:0016567
Seca4g07716 806 ProSitePatterns Protein kinases ATP-binding region signature. 458 479 IPR017441 GO:0005524
Seca4g07716 806 Coils Coil 371 391 - -
Seca4g07716 806 CDD STK_N 20 171 - -
Seca4g07716 806 SUPERFAMILY RING/U-box 734 803 - -
Seca4g07716 806 CDD RING-Ubox_WDSUB1-like 737 791 - -
Seca4g07716 806 Pfam Protein tyrosine and serine/threonine kinase 457 706 IPR001245 GO:0004672|GO:0006468
Seca4g07716 806 Gene3D Phosphorylase Kinase; domain 1 430 524 - -
Seca4g07716 806 ProSitePatterns Serine/Threonine protein kinases active-site signature. 570 582 IPR008271 GO:0004672|GO:0006468
Seca4g07716 806 SMART serkin_6 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07716 806 SUPERFAMILY Protein kinase-like (PK-like) 434 707 IPR011009 -
Seca4g07716 806 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 806 IPR013083 -
Seca4g07716 806 CDD STKc_IRAK 458 716 - -
Seca4g07716 806 PANTHER OS02G0152300 PROTEIN 19 800 - -
Seca4g07716 806 Coils Coil 404 429 - -
Seca4g07716 806 ProSiteProfiles Protein kinase domain profile. 452 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07716 Seca-Chr4 176339550 176348019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07716 17 804 U-box Gene Family AT4G25160 53.204 0.0 833
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Seca4g07716 PK_Tyr_Ser-Thr 3.9e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07716 - - gsj:114409387 1293.49