Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07705 ATGGAGCTTGTTCGTGGTGGTGAGCTCTTCAACAAGGTAGCCAAAGGTCGATTGAAAGAAGACCTCGCCAGAGTCTACTTTCAGCAGTTAATCTTCGTCGTTGATTTCTGCCACAGCCGCGGCGTTTACCACCGTGACCTCAAGCCGGAGAATCTTCTCCTTGACGAAGATGGGAACCTTAAGGATGATCATTTGGTTGCTATGTATAAGAAGATTTACAGGGGTGACTTTAAATGTCCACCTTGGTTCTCTGTGGAAGCTCGAAGGCTTGTTACCAAGCTTCTAGATCCGAATCCGAATACTCGAATAACAATTTCAAAGATCATGGACTCGTCTTGGTTCAAGAAACCGGAGCCGAAGAGCATGATGACGGCGAGAAGGAAAGAGGAAGAGGCGTTTGATTTTGAGAAGTCGAATGTGCCAACAACGATGAACGTGTTTCACATAATTTCGCTTTCGGAAGGGTTTGATTTGTCGTCGTTGTTTGAGGAGAAGAAGAGAGTGGAGAGGGAGGAGCTGAGGTTCGCGACGGCGGGGACACCGAGCAGAGTGATATCGAGGTTGGAGGAGGTGGCGAAGGCGGTGAAGTTCGATGTGAAGAGTAGTGATACGAAGGTGAGGCTTCAGGGTAGGAGCGTGGGAGGAAGGGGAAGTTGGCTATTGCGGCGGATATTTACGCCGTGA 684 0.4912 MELVRGGELFNKVAKGRLKEDLARVYFQQLIFVVDFCHSRGVYHRDLKPENLLLDEDGNLKDDHLVAMYKKIYRGDFKCPPWFSVEARRLVTKLLDPNPNTRITISKIMDSSWFKKPEPKSMMTARRKEEEAFDFEKSNVPTTMNVFHIISLSEGFDLSSLFEEKKRVEREELRFATAGTPSRVISRLEEVAKAVKFDVKSSDTKVRLQGRSVGGRGSWLLRRIFTP. 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07705 227 Pfam NAF domain 141 200 IPR004041 GO:0007165
Seca4g07705 227 Gene3D Transferase(Phosphotransferase) domain 1 62 141 - -
Seca4g07705 227 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 1 61 - -
Seca4g07705 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 42 54 IPR008271 GO:0004672|GO:0006468
Seca4g07705 227 Pfam Protein kinase domain 1 61 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07705 227 SMART serkin_6 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07705 227 ProSiteProfiles Protein kinase domain profile. 1 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07705 227 Gene3D Transferase(Phosphotransferase) domain 1 1 61 - -
Seca4g07705 227 ProSiteProfiles NAF domain profile. 139 163 IPR018451 GO:0007165
Seca4g07705 227 Gene3D Kinase associated domain 1, KA1 142 223 - -
Seca4g07705 227 SUPERFAMILY Protein kinase-like (PK-like) 1 122 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07705 Seca-Chr4 176047624 176048489 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07705 1 61 CBL-interacting serine-threonine protein kinases AT4G30960 90.164 3.80e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Seca4g07705 Pkinase 1.4e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07705 - K07198 var:108321114 271.552