Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07698 ATGGCTTTGAGGTTTATAGCTATTTCGGCGGTTTCAACAGTGTTAAGTTTTGTGGGTCTGCAGTTCTGCACAGACTTGTCAATAGATAAACTTAAATCAGACGGACTAATTGGCTGGAATTTAATTCAAGTGGACAATGCCAACCATGACATTGAGTTACCTCTTGGTTTATACACCACCATAGGGCTTGTGGTGAATTGCATGATCAATGTATTTGTCCTTCTCAATCTTTGTCTCAAGACTATGTTCTTCTCAGAGCTGTATCCTTCTGAATCTCGTAAACTGATTGAACGTCTTATTAATTATGTCATTTACAAGGGAACATTTCTACCACTGATTGTGCCACCAACAATTTATCAGGCAGGTCTTTGGTCAACTTGGTTGACCGTGCTTTGTTCTTTAAAGATGTTTCAAGCTCTGGCTAGAGATCGTTTGGAGCGGCTGAATGCTTCTCCAACTGCTACACCCTGGACATATCTTCGTGTATATTCAGCATTGTTATTCATTTTCTTGGTTGATGTTCTCTGGATAAGGCTTTGTCTGGTGATATATAGAACACATGAGTCCTCTATGTTTCTGTTACTTTTCTTTGAGCCTTTAAGTATTGCTTTTGAGACCCTTCAGGCCATTTTGGTACATGGATTTCAGTTGCTTGACATGTGGCTACATCATTCAGCTTGCAACAGCAGTGATTGCCGAATGCCTAAACTGCTTGACACATTAACCGCAGGTTCATTATTGGAATGGAAGGGAATTCTTATTCGGAACTTGGGTTTTTTCCTTGACATGGCAACCTTTTTTATGGCACTTGGTCATTACTTGTATATATGGCGGCTTCATGGAATGGCTTTCCATCTCGTAGATGCAGTGCTATTTCTAAATATACGGGCATTGCTTAGTGCAATAATAAATCGCATAAAAGGCTTTGTAAGGCTAAGGATAGCTCTAGGAGCACTACATGCAGCTCTTCCCGATGCAACCACTGAGGAGCTAAGAGCATATGATGATGAATGTGCTATTTGTAGAGAACCCATGGCTAAGGCTAAAAAGCTAAACTGCAATCACCTGTTCCATCTTGCATGCTTGAGATCTTGGTTGGATCAAGGCTTGACTGAGATGTACACTTGTCCAACATGCCGAAAGCCACTTTTTGTAGGCCGGCAGGAAAATGAAACAAACTCCAGTACAGGGGAAGTATCTAGTGATGAGCAACTTGCACGCCAAATGAGTGCAGGATTTGATCGGTCAAACTCTGCTAGACATACCATGCCTGCAGGGTTGTTTCCAAATCAGACACTGAACAATGCTGAAGGTGTTCCTTGGAGGGGTGCAGGGCTGGACTCAGGTTGGTTGCATTCTTGGCCAAATCAAGGTGTTGATGGAGCTGGTCCGTCTACTGCTATCAGAACAGTTGGATTGGGAAGAGTTCAAATGATGATGAGGCACCTTGCATCTGTTGGAGAAACCTATGGGCAGACTGCCTTTGAAGATGCTTCTTGGAACCTTTGGCCTATTAATCCCTCTCAGGCTTCTGCAAGTGGTTCAACCGTTCCTTCCTCTGGTGGTGGAAGATTGCCAGGAGGAACTGGTAGTTTACATATAAGGACCGCTTCAAATTCTGCAAATGATAATGTGGCAAATATACTTGCTATGGCTGAGACTGTTCGGGAGGTTCTACCTCATATTCCAGATGACATAATATTCCAGGATTTGCAGCGGACAAATTCTGTTACAGTTACTGTGAATAATCTTCTCCAAATGTGA 1764 0.4257 MALRFIAISAVSTVLSFVGLQFCTDLSIDKLKSDGLIGWNLIQVDNANHDIELPLGLYTTIGLVVNCMINVFVLLNLCLKTMFFSELYPSESRKLIERLINYVIYKGTFLPLIVPPTIYQAGLWSTWLTVLCSLKMFQALARDRLERLNASPTATPWTYLRVYSALLFIFLVDVLWIRLCLVIYRTHESSMFLLLFFEPLSIAFETLQAILVHGFQLLDMWLHHSACNSSDCRMPKLLDTLTAGSLLEWKGILIRNLGFFLDMATFFMALGHYLYIWRLHGMAFHLVDAVLFLNIRALLSAIINRIKGFVRLRIALGALHAALPDATTEELRAYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLTEMYTCPTCRKPLFVGRQENETNSSTGEVSSDEQLARQMSAGFDRSNSARHTMPAGLFPNQTLNNAEGVPWRGAGLDSGWLHSWPNQGVDGAGPSTAIRTVGLGRVQMMMRHLASVGETYGQTAFEDASWNLWPINPSQASASGSTVPSSGGGRLPGGTGSLHIRTASNSANDNVANILAMAETVREVLPHIPDDIIFQDLQRTNSVTVTVNNLLQM. 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07698 587 CDD CUE_RIN3_plant 548 585 IPR035667 -
Seca4g07698 587 SUPERFAMILY RING/U-box 326 386 - -
Seca4g07698 587 FunFam E3 ubiquitin protein ligase RIN2 546 586 - -
Seca4g07698 587 Gene3D - 546 586 - -
Seca4g07698 587 ProSiteProfiles Zinc finger RING-type profile. 338 380 IPR001841 -
Seca4g07698 587 ProSiteProfiles CUE domain profile. 547 587 IPR003892 GO:0043130
Seca4g07698 587 SMART FANCL_C_2 334 388 - -
Seca4g07698 587 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF8 11 587 - -
Seca4g07698 587 SMART ring_2 338 379 IPR001841 -
Seca4g07698 587 Pfam CUE domain 551 587 IPR003892 GO:0043130
Seca4g07698 587 FunFam E3 ubiquitin protein ligase RIN2 311 390 - -
Seca4g07698 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 312 391 IPR013083 -
Seca4g07698 587 CDD RING-H2_AMFR 336 383 - -
Seca4g07698 587 MobiDBLite consensus disorder prediction 509 530 - -
Seca4g07698 587 Pfam Ring finger domain 336 380 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07698 Seca-Chr4 175939493 175947004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07698 69 421 C3H Transcription Factor Family AT3G16090 27.368 6.69e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07698 K10636 - gmx:100819656 1055.05