Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07688 ATGGCTTCGGAGAAGAAACTGTCGAATCCCATGAGGGAAATCAAAGTTCAGAAACTCGTCCTCAACATCTCCGTCGGCGAGAGTGGAGATCGTCTCACCAGAGCTGCGAAGGTCCTTGAACAGCTTAGTGGCCAAACCCCTGTTTTCTCCAAAGGTATTAATTTATTATTATTATTTCGTTTTTTTTTTTTTTTAATTTTTGCCCCTAGGTACACTGTCCGTTCCTTTGGTATTAGAAGAAATGAAAAGATTGCATGCTATGTCACTGTTAGAGGCGACAAGGCAATGCAGCTTTTGGAGAGTGGGTTGAAGGTGAAGGAATATGAACTTCTGAGGAGAAACTTTAGTGACACTGGTTGTTTTGGCTTTGGTATTCAGGAGCATATTGATTTGGGAATCAAGTATGATCCCTCAACTGGTATTTATGGAATGGATTTCTTTGTTGTTTTGGAGCGCCCTGGATATCGTGTGGGACGTCGTCGCCGGTGCAAGTCTCGTGTGGGAATCCAGCATCGTGTCACAAAGGAGGATGCCATGAAGTGGTTCCAAGTTAAATATGAAGGTGTGATCCTAAACAAGTCCCAGGCAATTGTTTAG 597 0.4322 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKGINLLLLFRFFFFLIFAPRYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLERPGYRVGRRRRCKSRVGIQHRVTKEDAMKWFQVKYEGVILNKSQAIV. 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07688 198 FunFam Uncharacterized protein 3 39 - -
Seca4g07688 198 FunFam 60S ribosomal protein L11 65 191 - -
Seca4g07688 198 PANTHER 60S RIBOSOMAL PROTEIN L11-RELATED 2 193 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca4g07688 198 Pfam ribosomal L5P family C-terminus 83 181 IPR031309 -
Seca4g07688 198 SUPERFAMILY RL5-like 8 190 IPR022803 -
Seca4g07688 198 Gene3D - 2 194 IPR022803 -
Seca4g07688 198 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 64 189 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca4g07688 198 PIRSF RPL5p_RPL5a_RPL11e_RPL5o 1 53 IPR002132 GO:0003735|GO:0005840|GO:0006412
Seca4g07688 198 Pfam Ribosomal protein L5 9 51 IPR031310 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07688 Seca-Chr4 175359335 175361445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07688 1 198 Cytoplasmic Ribosomal Protein Gene Family AT2G42740 86.364 8.08e-124 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07688 K02868 - gmx:100810082 330.102