Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07684 ATGAAAGACGAAACAGAGAACATCATCATAGCCGAAAAGAAAGATGAAGATGAAGAACGAGATTTCGAGCTTCCTTTCTTTGATCTTTCTACAATAGCTCATGCCACCAATAACTTCTCAAATGGCAACAAACTTGGAGAAGGAGGTTTTGGACCAGTATATAAGGGTACATTGCCAGATGGACGAGAGATTGCTGTCAAAAGGCTTTCAAGGAGTTCTAAACAAGGATCAAAAGAATTTAAAAATGAAGTTATATTATGTGCAAAACTTCAACATCGAAATCTTGTTAAGGTTCTTGGTTGTTGCATTCAAGGAGATGAGAGAATGCTACTCTATGAATACATGCCCAATAAAAGCTTAGATTCATTTCTTTTTGATCCAGCTCAAAGTAGACTTCTTGACTGGCCCAAGCGCTTTCATATCATGTGTGCAATTTCTCGTGGACTTCTTTATCTTCATCAAGATTCTAGATTAAGGATCATCCATAGAGATCTAAAAGCAAGTAACATTTTATTAGACAATGATATGAATCCAAAAATTTCAGATTTTGGCTTGGCAAAAATTTGTGGAGATGATCAAATTGAAGGGAATACAAACAGAGTAGTTGGGACACATGGTTATATGGCGCCCGAATATGCCATTGATGGGCTATTCTCCATAAAATCCGATGTATTTAGCTTTGGTGTATTATTGCTAGAGATTATAAGTGGAAAGAAAAATAGAGGACTTACTTATCCAAGAAACAATCATAACCTTATTGGGCAAGCATGGAGGTTGTGGAAAGAGGGCAATCAAAAGGAATTCATTGATGATTGCTTAGGAGACTCGTGTATTTTATTTGAAGCCTTACGATGCATACAAATTGCTCTTTTGTGTTTACAATATCATCCAAATGATAGACCAAATATGGCATCTGTGCTTATGATGTTGACCAATGAAACTATTTTAGCTAAACCAAAGGAGCCTCATTTCTTAATAGAAGGGATCTCTATTGAAGGGGAATCTTCTACCACCGAAAAGTTAATGTCTTCATCCATCAATGAAGTAACCATTTCATTATTAGATGTTAGATAA 1074 0.3575 MKDETENIIIAEKKDEDEERDFELPFFDLSTIAHATNNFSNGNKLGEGGFGPVYKGTLPDGREIAVKRLSRSSKQGSKEFKNEVILCAKLQHRNLVKVLGCCIQGDERMLLYEYMPNKSLDSFLFDPAQSRLLDWPKRFHIMCAISRGLLYLHQDSRLRIIHRDLKASNILLDNDMNPKISDFGLAKICGDDQIEGNTNRVVGTHGYMAPEYAIDGLFSIKSDVFSFGVLLLEIISGKKNRGLTYPRNNHNLIGQAWRLWKEGNQKEFIDDCLGDSCILFEALRCIQIALLCLQYHPNDRPNMASVLMMLTNETILAKPKEPHFLIEGISIEGESSTTEKLMSSSINEVTISLLDVR. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07684 357 Gene3D Transferase(Phosphotransferase) domain 1 115 321 - -
Seca4g07684 357 SUPERFAMILY Protein kinase-like (PK-like) 22 310 IPR011009 -
Seca4g07684 357 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 14 336 - -
Seca4g07684 357 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 3 114 - -
Seca4g07684 357 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 115 318 - -
Seca4g07684 357 CDD STKc_IRAK 45 312 - -
Seca4g07684 357 Gene3D Phosphorylase Kinase; domain 1 4 114 - -
Seca4g07684 357 ProSiteProfiles Protein kinase domain profile. 39 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g07684 357 Pfam Protein tyrosine and serine/threonine kinase 41 308 IPR001245 GO:0004672|GO:0006468
Seca4g07684 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Seca4g07684 357 SMART serkin_6 39 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07684 Seca-Chr4 175247469 175249126 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07684 15 357 Receptor kinase-like Gene Family AT4G23150 53.161 4.22e-130 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g07684 PK_Tyr_Ser-Thr 8.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07684 - - tpra:123915417 546.969