Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07675 ATGGGTTCTAAGAGGCCACTTTTGATGTCATCTCCAAGAACTCCAAGTAACCAAGAGCTTCCCACAATTCCTGTTTTTCCTGAACTACCCAAATCAAAGTCAAGTTCAAGCAACACTGTTACCTTCTCTGGGGTGGACTCAAGCAACAACCCAGTTGAGAGAAAGAACTCTTCAAACTCATCATCATCATCATCACGCAGAAGTGCCATGTCCATTCACTCTGTGAGCTCTGGCAGGAACAACTCAATCAAGGAAGTGAGTTTCAACCATTCAGGACCAAAACCTGTTCGATATGGTTCCTCAAAAGGTGCTGATTCTGATGGACTCAGCTTGTCCCAGAAGGAACTCAGAGATGAAGATGCAAGATTGGTTTATATAAATGATCCTGAAAAGACCAATGAGACTATTGAATTTTCAGGGAATTCAATCCGTACTTCAAAATACTCCATCATCACTTTTATCCCAAGGAATCTGTTTGAACAATTCCACAGAGTTGCTTATATTTATTTTCTTATAATTGCCATTCTCAATCAGCTTCCTCAGCTTGCAGTGTTTGGGAGGGGTGTTTCTATTATTCCATTAGCCTTTGTCCTGTTTGTTACAGGTGTGAAGGATGCTTTTGAGGATTGGAGGAGGCACAAGTCAGATAAAATTGAGAACAACAGGTTAGCATCAGTTTTAGTTAATGATAAATTCATAGAGAAGAAATGGAAGGATATAAGGGTTGGTGAGATCATAAAAATAAAGGCAAATGAAACCATTCCTTGTGATATTGTGTTGCTCTCAACTAGTGATCCAACTGGAGTTGCATATGTGCAGACTATTAATCTAGATGGAGAGTCCAATTTGAAGACTAGGTATGCAAAACAAGAGACAGGTTCAAAGGTTCCTGAGAAGGAGAGGATTAATGGGTTGATTAAGTGTGAGAAACCAAATAGGAATATATATGGATTTCAAGCTAACATGGAAATTGATGGCAAGAAGTTATCACTTGGATCCTCTAATATTGTCCTTAGAGGGTGTGAACTTAAGAATACTAGTTGGGCACTTGGTGTTGCTGTGTATTGTGGCCGTGAGACCAAAGCTATGCTCAATAGTTCAGGAGCTCCATCCAAGAGGAGTAGGTTGGAGACACGCATGAACTCTGAGATCATCATACTTTCTTTCTTTCTTGTAGCTTTGTGTACAGTCACCTCAGTTTGTGCTGCTGTTTGGTTAAAGCGCCACAAGGATGAGTTGAATCTCTTGCCTTATTATAGGAAGCTGGATTTTTCAGATGGGGAAGTTGAAAGCTATAAATACTATGGATGGGGATTGGAAATTTTTTTCACATTCCTTATGTCAGTTATAGTATTTCAGGTCATGATTCCTATATCCTTGTACATTTCTATGGAGCTTGTTCGTGTTGGTCAGGCCTACTTCATGATTGAAGACAACAAAATGTATGATGAGGAAACAAATTCAAGATTTCAGTGCAGGGCTTTGAACATTAATGAAGATTTGGGGCAGATTAAATATGTGTTCTCTGATAAAACTGGTACACTTACTGAGAACAAGATGGAGTTTCAATGTGCAAGCATCTGGGGGGTTGATTATAGTGCTACAAAAGCCAGCATTGAGGATGAGCAAGTTGAATATTCTGTACAAGTGGATGGAAAGGTTTTGAGACCAAAGATGAAGGTGAAAGTTAATCCAGAGCTTTTGCATTTATCAAGAAGAGGACTTGAAAATAAGGAGGCAAAACGGATTCATGATTTCTTTCTAGCACTTGCAACCTGCAATACTATTGTGCCTATTGTTGTTGACACACCTGATCCTGATGTCAAGCTGATAGATTACCAAGGAGAATCACCAGATGAACAAGCATTAGCATATGCTGCTGCAGCCTATGGTTTTATGCTTATAGAACGAACCTCAGGCCATGTAGTCATTGATATTCAGGGAGAAAGAAAAAAGTTAAATGTCTTGGGTTTGCATGAATTTGACAGTGATAGGAAGAGGATGTCAGTTATATTGGGGTACCCTGACAATTCTGTGAAAGCTTTTGTCAAAGGTGCAGATACATCCATGCTTAGTGTGGCAGATAAATCACTTTACATGAACTTAATAAGAGCCACTGAAGCCCATCTTCACTCTTATTCTTCATTGGGTTTGAGGACACTTGTTATTGGAATGAGGGAATTGAATGTTTCAGAATATGAGCAATGGCATACTGCATATGAGGCAGCAAGCACTGCTTTGTTTGGTAGGGCTGCTTTGCTCCGCAAGATTTCTAGCAATGTAGAGAACAATATATGCATATTGGGAGCATCTGCTATTGAAGATAAACTGCAGAAAGGTGTTCCAGAAGCTATTGAGTCTCTAAGGACTGCAGGTATTAAAGTATGGGTGTTGACTGGGGACAAACAAGAAACTGCCATATCCATTGGTTACTCCTCAAAGCTTTTAACAAATAAAATGACTCAAGTTATAATCAATAGCAACAATAAAGCCTCATGTAGAAAATGTTTAGATGATGCCCTTGTCATGTCTAAAAAACTCAAGTCCACATCTGGCAACAATACTCGAGGAAGTTCTGATGCAGTTACAACTCAGATAGCCTTGATTATTGATGGTGGCAGCCTTGTACATATCCTTGACAGTGAACTTGAAGAACAGCTATTTCATCTTGCAAGTAAATGTTCTGTGGTGCTTTGTTGTCGAGTGGCACCATTGCAAAAGGCTGGGATTGTTTCCCTTGTGAAGAATAGGACATCTGACATGACACTAGCCATTGGAGATGGTGCTAATGATGTGTCAATGATTCAAATGGCTGATGTTGGAGTTGGCATCAGTGGACAAGAGGGTAGGCAAGCAGTAATGTCATCAGATTTTGCAATGGGGCAGTTTAGGTTCTTAGTTCCTCTCTTATTGATACATGGACACTGGAATTACCAACGGCTGGGTTACATGATACTATACAATTTTTACAGAAATGCTGTCCTTGTTCTTGTCCTATTTTGGTATGTGCTCTACACTGCCTTCACTTTGACAAGTGCTATAAATGAGTGGAGTACCACATTATATTCAATAATCTACAGTTCATTGCCAACTATTATTGTTGGTATTCTCGACAAGGATCTTGGTAGAAGGACTCTCCTAAAGTATCCTCAGCTTTATGGTGCTGGACAGAGACATGAGGCCTACAACAAAAAATTGTTTTTGTTGACAATGGCTGATACTTTGTGGCAAAGCATGGCTATCTTTTGGCCTCCCCTCTTTGCATATTGGAGTAGCAATATAGATGTGGCAAGTATAGGAGACCTTTGGACTTTTGCAGTTGTTATTTTGGTGAATTTACACTTGGCCATGGATGTTGTCAGATGGTATTGGGTGACTCATGCTGTCATTTGGGGATCTATTCTTGCAACTTTCATCACTGTCATGATCATTGATGCTATACCCACACTTCCTGGTTACTGGGCCTTCTTCCATGTTATACGCACTGGATTGTTTTGGTCATTGTTGCTGGGAATTGTGATAGCCGCATTGCTTCCTCGTTTGGTTGTAAAGTTTATCTACCAATATTATTTTCCTAGTGACATTCAGATTTCTAGAGAAGCTGAGAAGATGGAATATCAAAGAGTTGTTGAAAGTGAACAGATTGAAATGCTTCCTATCTCAGTTTCTCAACCAATATAA 3681 0.3964 MGSKRPLLMSSPRTPSNQELPTIPVFPELPKSKSSSSNTVTFSGVDSSNNPVERKNSSNSSSSSSRRSAMSIHSVSSGRNNSIKEVSFNHSGPKPVRYGSSKGADSDGLSLSQKELRDEDARLVYINDPEKTNETIEFSGNSIRTSKYSIITFIPRNLFEQFHRVAYIYFLIIAILNQLPQLAVFGRGVSIIPLAFVLFVTGVKDAFEDWRRHKSDKIENNRLASVLVNDKFIEKKWKDIRVGEIIKIKANETIPCDIVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETGSKVPEKERINGLIKCEKPNRNIYGFQANMEIDGKKLSLGSSNIVLRGCELKNTSWALGVAVYCGRETKAMLNSSGAPSKRSRLETRMNSEIIILSFFLVALCTVTSVCAAVWLKRHKDELNLLPYYRKLDFSDGEVESYKYYGWGLEIFFTFLMSVIVFQVMIPISLYISMELVRVGQAYFMIEDNKMYDEETNSRFQCRALNINEDLGQIKYVFSDKTGTLTENKMEFQCASIWGVDYSATKASIEDEQVEYSVQVDGKVLRPKMKVKVNPELLHLSRRGLENKEAKRIHDFFLALATCNTIVPIVVDTPDPDVKLIDYQGESPDEQALAYAAAAYGFMLIERTSGHVVIDIQGERKKLNVLGLHEFDSDRKRMSVILGYPDNSVKAFVKGADTSMLSVADKSLYMNLIRATEAHLHSYSSLGLRTLVIGMRELNVSEYEQWHTAYEAASTALFGRAALLRKISSNVENNICILGASAIEDKLQKGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQVIINSNNKASCRKCLDDALVMSKKLKSTSGNNTRGSSDAVTTQIALIIDGGSLVHILDSELEEQLFHLASKCSVVLCCRVAPLQKAGIVSLVKNRTSDMTLAIGDGANDVSMIQMADVGVGISGQEGRQAVMSSDFAMGQFRFLVPLLLIHGHWNYQRLGYMILYNFYRNAVLVLVLFWYVLYTAFTLTSAINEWSTTLYSIIYSSLPTIIVGILDKDLGRRTLLKYPQLYGAGQRHEAYNKKLFLLTMADTLWQSMAIFWPPLFAYWSSNIDVASIGDLWTFAVVILVNLHLAMDVVRWYWVTHAVIWGSILATFITVMIIDAIPTLPGYWAFFHVIRTGLFWSLLLGIVIAALLPRLVVKFIYQYYFPSDIQISREAEKMEYQRVVESEQIEMLPISVSQPI. 1227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07675 1226 PRINTS P-type cation-transporting ATPase superfamily signature 925 944 - -
Seca4g07675 1226 PRINTS P-type cation-transporting ATPase superfamily signature 508 522 - -
Seca4g07675 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 514 781 IPR023299 GO:0000166
Seca4g07675 1226 CDD P-type_ATPase_APLT_Dnf-like 140 1083 - -
Seca4g07675 1226 SUPERFAMILY Calcium ATPase, transduction domain A 221 362 IPR008250 -
Seca4g07675 1226 SFLD p-type atpase 492 976 IPR044492 -
Seca4g07675 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 953 1193 IPR032630 -
Seca4g07675 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 510 516 IPR018303 -
Seca4g07675 1226 Gene3D - 202 365 - -
Seca4g07675 1226 SUPERFAMILY HAD-like 495 966 IPR036412 -
Seca4g07675 1226 Pfam E1-E2 ATPase 224 465 - -
Seca4g07675 1226 FunFam Phospholipid-transporting ATPase 196 365 - -
Seca4g07675 1226 FunFam Phospholipid-transporting ATPase 612 745 - -
Seca4g07675 1226 Gene3D - 764 965 IPR023214 -
Seca4g07675 1226 Gene3D - 613 745 IPR023299 GO:0000166
Seca4g07675 1226 Pfam Cation transport ATPase (P-type) 611 692 - -
Seca4g07675 1226 Pfam Phospholipid-translocating ATPase N-terminal 124 189 IPR032631 -
Seca4g07675 1226 MobiDBLite consensus disorder prediction 1 112 - -
Seca4g07675 1226 NCBIfam HAD-IC family P-type ATPase 440 529 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g07675 1226 NCBIfam HAD-IC family P-type ATPase 896 1009 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca4g07675 1226 FunFam Phospholipid-transporting ATPase 764 965 - -
Seca4g07675 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 138 1192 IPR023298 -
Seca4g07675 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 112 1205 - -
Seca4g07675 1226 MobiDBLite consensus disorder prediction 29 88 - -
Seca4g07675 1226 NCBIfam phospholipid-translocating P-type ATPase 138 1200 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Seca4g07675 1226 SFLD C1.7: P-type atpase like 492 976 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07675 Seca-Chr4 174766610 174772273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07675 74 1217 Primary Pumps ATPases AT5G04930 69.170 0.0 1687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07675 K14802 - gmx:100813982 1932.92