Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g07666 GGTGCTTGTGGTTATGGAGACCTCCACAAGGTCGATTATGGGAAATACAGTACTGGGTTAAGCACCATCTTGTTCAAAAGAGGGAGTACTTGTGGGGTATGCTATGAGATTAGATGTGTTGACCACATCTTAAGGTGCTTGCAGGGAAGCCCCTCTGTAGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGACTCGCAGCTGATTATGGTGGCTGGTGCAAATTTCCAAAAGAACATTATGAGATGTCAGAAGCTGCATTTGGTGAAATTGCCAAGAGAAAAGCTGATATAGTGCCAGTTCAATATAGAAGAGTAAAATGTCAAAGAAATGGTGGCCTGAAATTCACAATGAGTGGAAGTTATCACTTCTATCAAGTCCTGATTACCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGATGGGAGTTATAACAGGATGGATACCCGTGGCAAGGAATTGGGGCCAAAACTGGCATTCCAATGTGAACCTTCAGAGACAGCCTCTGTCCTTTGAGGTGACTATCAGCAGCCGAAAAGCAGTCACATCTTACAATGTAGCCCCTGCAAACTGGCAATTTGGACAGACATTTGAAGGAAAACAGTTCTAG 621 0.438 GACGYGDLHKVDYGKYSTGLSTILFKRGSTCGVCYEIRCVDHILRCLQGSPSVVVTATDFCAPNYGLAADYGGWCKFPKEHYEMSEAAFGEIAKRKADIVPVQYRRVKCQRNGGLKFTMSGSYHFYQVLITNVGLDGEVVAVKVMGVITGWIPVARNWGQNWHSNVNLQRQPLSFEVTISSRKAVTSYNVAPANWQFGQTFEGKQF. 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g07666 206 PRINTS Expansin/Lol pI family signature 151 165 IPR007118 GO:0005576
Seca4g07666 206 PRINTS Expansin/Lol pI family signature 97 113 IPR007118 GO:0005576
Seca4g07666 206 PRINTS Expansin/Lol pI family signature 21 39 IPR007118 GO:0005576
Seca4g07666 206 PRINTS Expansin/Lol pI family signature 189 203 IPR007118 GO:0005576
Seca4g07666 206 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 1 114 IPR007112 -
Seca4g07666 206 Pfam Expansin C-terminal domain 116 192 IPR007117 -
Seca4g07666 206 Gene3D - 1 109 IPR036908 -
Seca4g07666 206 SUPERFAMILY Barwin-like endoglucanases 1 132 IPR036908 -
Seca4g07666 206 PRINTS Expansin signature 12 26 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 125 146 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 160 181 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 89 102 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 53 63 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 72 89 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 189 205 IPR002963 GO:0009664
Seca4g07666 206 PRINTS Expansin signature 113 125 IPR002963 GO:0009664
Seca4g07666 206 Pfam Lytic transglycolase 19 104 IPR009009 -
Seca4g07666 206 SMART dpbb_1 17 104 IPR007112 -
Seca4g07666 206 CDD DPBB_EXPA_N 1 109 - -
Seca4g07666 206 Gene3D - 110 206 IPR036749 -
Seca4g07666 206 SUPERFAMILY PHL pollen allergen 111 203 IPR036749 -
Seca4g07666 206 PANTHER EXPANSIN-A15 1 206 IPR002963 GO:0009664
Seca4g07666 206 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 124 203 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g07666 Seca-Chr4 174675451 174676181 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g07666 1 206 Expansin Gene Family AT4G38210 66.505 6.30e-106 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g07666 - - lja:Lj0g3v0263569.1 371.318